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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002678
  • pan locus tag?: SAUPAN006446000
  • symbol: JSNZ_002678
  • pan gene symbol?: —
  • synonym:
  • product: rhodanese-related sulfurtransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002678
  • symbol: JSNZ_002678
  • product: rhodanese-related sulfurtransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 2696913..2697869
  • length: 957
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAACTATCAAGTTCTTTTATATTATAAATATACGCCGATTGATGACCCTGCACAGTTT
    GCTCAGGATCACTTAGCGTTTTGCAAAGCACACCATTTAAAAGGTAGAATTCTTGTTTCT
    ACAGAAGGTATTAACGGCACATTATCTGGTACAAAAGAAGAAACCGAACAATATATGGCA
    CATATGCATGCCGATGAACGATTCAAAGATATGGTGTTTAAAATTGATGAAACTGAAGGA
    CATGCTTTTAAGAAAATGCATGTACGTCCTCGAAAAGAAATCGTTGCTTTAGATTTAGAA
    GATGACGTCGATCCAAGACACACAACTGGCCAATATTTATCACCTGTAGAATTTAGAAAA
    GCTCTTGAAGATGATGACACAGTCATTATTGATGCACGTAATGATTATGAATTTGATTTA
    GGTCATTTCCGAGGTGCAATTCGTCCAAATATCACGCGCTTTAGAGATTTGCCTGACTGG
    ATTAAAGAGAATAAAGCGTTATTTGCAGATAAAAAAGTGGTTACGTACTGTACTGGTGGC
    ATTCGATGTGAAAAATTTTCTGGATGGCTTTTAAAAGAAGGTTTCGAAGATGTAGCTCAA
    CTTCATGGCGGTATTGCTACATATGGTAAAGATCCTGAAACAAAAGGTGAATATTGGGAC
    GGTAAAATGTACGTATTTGATGACCGTATCAGTGTTGATATCAACCAAGTTGAAAAAACA
    ATTATTGGTAAGGATTGGTTTGATGGCAAACCATGTGAACGTTATATTAATTGCGCTAAC
    CCAGAATGTAATAAACAAATATTAGTTTCTGAAGAAAACGAAACTAAATATTTAGGTGCA
    TGCTCTTATGAATGTGCTAAACATGAGCGTAATCGTTATGTTCAAGCAAATAATATTAGT
    GATAATGAGTGGCAACAACGTTTAACAAACTTTGATGATTTACATCAACATGCTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    957

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002678
  • symbol: JSNZ_002678
  • description: rhodanese-related sulfurtransferase
  • length: 318
  • theoretical pI: 5.2991
  • theoretical MW: 36995.2
  • GRAVY: -0.747799

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA 2-selenouridine synthase (TIGR03167; EC 2.9.1.-; HMM-score: 18)
    Cys-rich protein, LA_1312 family (TIGR04453; HMM-score: 15.2)
    and 1 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair replication factor-a protein 1 (rpa1) (TIGR00617; HMM-score: 4.3)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    Acylphosphatase (CL0622) UPF0176_N; UPF0176 acylphosphatase like domain (PF17773; HMM-score: 103)
    and 5 more
    no clan defined Rhodanese_C; Rhodanase C-terminal (PF12368; HMM-score: 72.6)
    Phosphatase (CL0031) Rhodanese; Rhodanese-like domain (PF00581; HMM-score: 54.4)
    OB (CL0021) Rep_fac-A_C; Replication factor-A C terminal domain (PF08646; HMM-score: 14.4)
    no clan defined DUF7204; Domain of unknown function (DUF7204) (PF23834; HMM-score: 14)
    Acylphosphatase (CL0622) BLUF; Sensors of blue-light using FAD (PF04940; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9824
    • Cytoplasmic Membrane Score: 0.0002
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0173
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005961
    • TAT(Tat/SPI): 0.000256
    • LIPO(Sec/SPII): 0.000577
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNYQVLLYYKYTPIDDPAQFAQDHLAFCKAHHLKGRILVSTEGINGTLSGTKEETEQYMAHMHADERFKDMVFKIDETEGHAFKKMHVRPRKEIVALDLEDDVDPRHTTGQYLSPVEFRKALEDDDTVIIDARNDYEFDLGHFRGAIRPNITRFRDLPDWIKENKALFADKKVVTYCTGGIRCEKFSGWLLKEGFEDVAQLHGGIATYGKDPETKGEYWDGKMYVFDDRISVDINQVEKTIIGKDWFDGKPCERYINCANPECNKQILVSEENETKYLGACSYECAKHERNRYVQANNISDNEWQQRLTNFDDLHQHA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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