Jump to navigation
Jump to search
FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_002676
- pan locus tag?: SAUPAN006443000
- symbol: JSNZ_002676
- pan gene symbol?: —
- synonym:
- product: YceI family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_002676
- symbol: JSNZ_002676
- product: YceI family protein
- replicon: chromosome
- strand: +
- coordinates: 2695034..2695549
- length: 516
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481ATGACTAACTTTACTTTTGATGGTGCACACAGTAGTTTAGAATTCCAAATTAAACATTTA
ATGGTTTCTAAAGTGAAAGGTTCATTTGATCAATTTGATGTAGCTGTTGAAGGAGATATT
AATGACTTCAGTACTTTGAAAGCTACTGCAACAATTATTCCAAGCTCAATTAACACTAAA
AACGAAGCACGTGATAACCACTTAAAATCTGGTGATTTCTTTGGTACTGATGAATTTGAT
AAAATCACGTTTGAAACAAAATCAGTTACTGAAAACAAAGTTGTTGGTGATTTAACAATT
AAAGGTATCACTAACGAAGAAACATTCGACGTTGAATTCAACGGAGTAAGTAAGAATCCT
ATGGATGGTTCTCAAGTAACAGGTATTATTGTTACTGGTACAATCAATAGAGAAAAATAT
GGCATTAACTTTAACCAAGCACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAA
TTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAA60
120
180
240
300
360
420
480
516
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_002676
- symbol: JSNZ_002676
- description: YceI family protein
- length: 171
- theoretical pI: 4.39307
- theoretical MW: 18725.7
- GRAVY: -0.31345
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: no clan defined YceI; YceI-like domain (PF04264; HMM-score: 135.5)and 2 moreE-set (CL0159) DUF7498; Domain of unknown function (DUF7498) (PF24328; HMM-score: 15.2)DNA_clamp (CL0060) PCNA_N; Proliferating cell nuclear antigen, N-terminal domain (PF00705; HMM-score: 12.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.8355
- Cytoplasmic Membrane Score: 0.0001
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.1643
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003464
- TAT(Tat/SPI): 0.000704
- LIPO(Sec/SPII): 0.000533
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MTNFTFDGAHSSLEFQIKHLMVSKVKGSFDQFDVAVEGDINDFSTLKATATIIPSSINTKNEARDNHLKSGDFFGTDEFDKITFETKSVTENKVVGDLTIKGITNEETFDVEFNGVSKNPMDGSQVTGIIVTGTINREKYGINFNQALETGGVMLGKDVKFEASAEFSISE
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: SigB (activation) regulon
SigB (sigma factor) controlling a large regulon involved in stress/starvation response and adaptation; regulation predicted or transferred from N315 and NCTC 8325 in Wolfgramm et al. (https://doi.org/10.1101/2025.09.03.674026) other strains
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.