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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002348
  • pan locus tag?: SAUPAN005899000
  • symbol: JSNZ_002348
  • pan gene symbol?: —
  • synonym:
  • product: YbgA family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002348
  • symbol: JSNZ_002348
  • product: YbgA family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2345827..2346210
  • length: 384
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAAGAACGTGGCTATATCGAACAGCTTTGGCGTGAGGAAAAATATCATGTATTGTTA
    CACAGTCAACAGTCTTACCAAATGATAAGGAATGCTTTAAAAACGGATTTATCACTTCAT
    CAAGTTCAACAAATGATTGATGATGCTTTGTTAATTGAACCGAGTATAGGAAGTGTATGT
    AATGCTTTTGATCATATGTGGGGATATTTTAAAAAATGTGCGAATGAAGAAGAAAGACAA
    CAATCAAAACTACTTAAAGCTGATTTTATTAATGGTAAAATCGACACCCAAACTTTATTA
    GATTTTTTAGCAGAACTTGCTAATAAATATGATGTTCAATATTTACTACAAAGTCGTGTT
    TTAAACACAAAAAGAAAGAGATAG
    60
    120
    180
    240
    300
    360
    384

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002348
  • symbol: JSNZ_002348
  • description: YbgA family protein
  • length: 127
  • theoretical pI: 8.21272
  • theoretical MW: 15094.2
  • GRAVY: -0.609449

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined DUF1722; Protein of unknown function (DUF1722) (PF08349; HMM-score: 82.4)
    and 3 more
    RecG_N; RecG N-terminal helical domain (PF17190; HMM-score: 15.7)
    PF (CL0431) Intu_longin_3; Intu longin-like domain 3 (PF19033; HMM-score: 13.3)
    no clan defined MS_N; Malate synthase, N-terminal domain (PF20656; HMM-score: 11.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7577
    • Cytoplasmic Membrane Score: 0.1447
    • Cell wall & surface Score: 0.0026
    • Extracellular Score: 0.095
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005984
    • TAT(Tat/SPI): 0.000211
    • LIPO(Sec/SPII): 0.000332
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKERGYIEQLWREEKYHVLLHSQQSYQMIRNALKTDLSLHQVQQMIDDALLIEPSIGSVCNAFDHMWGYFKKCANEEERQQSKLLKADFINGKIDTQTLLDFLAELANKYDVQYLLQSRVLNTKRKR

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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