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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_002348
- pan locus tag?: SAUPAN005899000
- symbol: JSNZ_002348
- pan gene symbol?: —
- synonym:
- product: YbgA family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_002348
- symbol: JSNZ_002348
- product: YbgA family protein
- replicon: chromosome
- strand: +
- coordinates: 2345827..2346210
- length: 384
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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121
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361ATGAAAGAACGTGGCTATATCGAACAGCTTTGGCGTGAGGAAAAATATCATGTATTGTTA
CACAGTCAACAGTCTTACCAAATGATAAGGAATGCTTTAAAAACGGATTTATCACTTCAT
CAAGTTCAACAAATGATTGATGATGCTTTGTTAATTGAACCGAGTATAGGAAGTGTATGT
AATGCTTTTGATCATATGTGGGGATATTTTAAAAAATGTGCGAATGAAGAAGAAAGACAA
CAATCAAAACTACTTAAAGCTGATTTTATTAATGGTAAAATCGACACCCAAACTTTATTA
GATTTTTTAGCAGAACTTGCTAATAAATATGATGTTCAATATTTACTACAAAGTCGTGTT
TTAAACACAAAAAGAAAGAGATAG60
120
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384
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_002348
- symbol: JSNZ_002348
- description: YbgA family protein
- length: 127
- theoretical pI: 8.21272
- theoretical MW: 15094.2
- GRAVY: -0.609449
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: no clan defined DUF1722; Protein of unknown function (DUF1722) (PF08349; HMM-score: 82.4)and 3 moreRecG_N; RecG N-terminal helical domain (PF17190; HMM-score: 15.7)PF (CL0431) Intu_longin_3; Intu longin-like domain 3 (PF19033; HMM-score: 13.3)no clan defined MS_N; Malate synthase, N-terminal domain (PF20656; HMM-score: 11.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.7577
- Cytoplasmic Membrane Score: 0.1447
- Cell wall & surface Score: 0.0026
- Extracellular Score: 0.095
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005984
- TAT(Tat/SPI): 0.000211
- LIPO(Sec/SPII): 0.000332
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MKERGYIEQLWREEKYHVLLHSQQSYQMIRNALKTDLSLHQVQQMIDDALLIEPSIGSVCNAFDHMWGYFKKCANEEERQQSKLLKADFINGKIDTQTLLDFLAELANKYDVQYLLQSRVLNTKRKR
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: ScrR* (repression) regulon
ScrR* (TF) important in Sucrose utilization; regulation predicted or transferred from N315 and NCTC 8325 in Wolfgramm et al. (https://doi.org/10.1101/2025.09.03.674026)
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here.