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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001741
- pan locus tag?: SAUPAN004429000
- symbol: sapep
- pan gene symbol?: —
- synonym:
- product: Mn(2+)-dependent dipeptidase Sapep
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001741
- symbol: sapep
- product: Mn(2+)-dependent dipeptidase Sapep
- replicon: chromosome
- strand: -
- coordinates: 1787161..1788570
- length: 1410
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1381ATGTGGAAAGAAAAAGTTCAACAATACGAAGATCAAATCATTAATGACTTAAAAGGATTA
TTAGCAATTGAAAGTGTGAGAGATGATGCAAAAGCATCAGAAGACGCACCGGTTGGTCCA
GGTCCTCGTAAGGCATTAGACTACATGTATGAAATTGCACATAGAGATGGATTTACAACA
CATGATGTGGATCATATTGCAGGAAGAATTGAGGCAGGTAAAGGAAATGACGTATTAGGT
ATCTTATGTCATGTTGACGTTGTTCCTGCTGGTGATGGATGGGATAGTAATCCGTTCGAG
CCGGTTGTAACAGAAGATGCTATCATAGCTAGAGGTACACTTGATGACAAAGGTCCAACA
ATTGCTGCTTATTATGCAATTAAGATATTAGAAGATATGAATGTGGATTGGAAGAAACGT
ATTCATATGATTATTGGTACGGATGAAGAATCTGATTGGAAATGTACGGATCGCTATTTT
AAAACAGAAGAAATGCCAACATTAGGTTTTGCACCAGATGCAGAATTTCCGTGTATTCAT
GGTGAAAAAGGCATTACAACATTTGACTTAGTTCAAAATAAGCTTGCTGAAGATCAAGAT
GAACCTGATTATGAACTAATAACTTTTAAATCTGGTGAACGTTACAACATGGTGCCTGAT
CATGCAGAAGCAAGAGTGCTTGTTAAAGAAAATATGACAGATGTTATTCAAGACTTTGAG
TACTTTTTAGAACAAAATCATTTACAAGGTGATAGTACTGTTGATAGTGGCATTCTAGTT
TTAACAGTTGAAGGTAAAGCGGTTCATGGTATGGAACCATCTATCGGTGTGAATGCGGGT
CTTTACTTACTAAAATTCTTAGCATCATTAAATCTTGATAATAATGCACAAGCGTTTGTA
GCATTTAGTAATCGCTACTTGTTTAATTCAGATTTTGGTGAAAAGATGGGAATGAAATTC
CATACAGATGTCATGGGTGACGTGACAACTAACATTGGTGTTATTACATATGATAATGAA
AACGCAGGTCTTTTCGGTATCAACTTACGCTACCCAGAAGGATTTGAATTTGAAAAAGCT
ATGGATCGTTTTGCAAATGAGATTCAACAATATGGCTTTGAAGTGAAATTAGGTAAAGTC
CAACCACCACATTATGTTGATAAAAATGATCCTTTTGTACAAAAGTTAGTTACTGCATAT
AGAAATCAAACAAATGATATGACTGAACCTTATACTATAGGTGGCGGTACTTATGCGAGA
AACTTAGACAAGGGTGTAGCATTTGGCGCAATGTTTAGTGATTCTGAAGATTTAATGCAT
CAGAAAAATGAATATATCACTAAAAAACAGTTATTTAACGCAACTAGTATTTACTTAGAA
GCAATTTATTCATTATGCGTGGAGGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001741
- symbol: Sapep
- description: Mn(2+)-dependent dipeptidase Sapep
- length: 469
- theoretical pI: 4.32523
- theoretical MW: 52807.9
- GRAVY: -0.402985
⊟Function[edit | edit source]
- TIGRFAM: putative dipeptidase (TIGR01887; EC 3.4.13.-; HMM-score: 636.7)and 11 moreProtein fate Degradation of proteins, peptides, and glycopeptides dipeptidase PepV (TIGR01886; EC 3.4.13.-; HMM-score: 459.4)Protein fate Degradation of proteins, peptides, and glycopeptides peptidase, ArgE/DapE family (TIGR01910; EC 3.4.-.-; HMM-score: 105.6)Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01246; EC 3.5.1.18; HMM-score: 62.3)putative selenium metabolism hydrolase (TIGR03526; HMM-score: 45.1)N-acyl-L-amino-acid amidohydrolase (TIGR01880; EC 3.5.1.14; HMM-score: 43.5)Amino acid biosynthesis Glutamate family acetylornithine deacetylase (ArgE) (TIGR01892; EC 3.5.1.16; HMM-score: 40.1)peptidase T-like protein (TIGR01883; HMM-score: 30.6)N-acetyl-ornithine/N-acetyl-lysine deacetylase (TIGR01902; HMM-score: 30.6)Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01900; EC 3.5.1.18; HMM-score: 19.9)Xaa-His dipeptidase (TIGR01893; EC 3.4.13.20; HMM-score: 15)Protein fate Degradation of proteins, peptides, and glycopeptides amidohydrolase (TIGR01891; HMM-score: 12.5)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: ZnExoPePases (CL0865) Peptidase_M20; Peptidase family M20/M25/M40 (PF01546; HMM-score: 84.6)and 2 moreno clan defined M20_dimer; Peptidase dimerisation domain (PF07687; HMM-score: 35.8)ZnExoPePases (CL0865) Peptidase_M28; Peptidase family M28 (PF04389; HMM-score: 13.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9973
- Cytoplasmic Membrane Score: 0.0014
- Cell wall & surface Score: 0.0004
- Extracellular Score: 0.0009
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.014046
- TAT(Tat/SPI): 0.001237
- LIPO(Sec/SPII): 0.001764
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLAEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMEPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)