From AureoWiki
Jump to navigation Jump to search

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001502
  • pan locus tag?: SAUPAN004064000
  • symbol: JSNZ_001502
  • pan gene symbol?: —
  • synonym:
  • product: tripeptidase T

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001502
  • symbol: JSNZ_001502
  • product: tripeptidase T
  • replicon: chromosome
  • strand: -
  • coordinates: 1544966..1546099
  • length: 1134
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGATTAATGAGCAAAGATTACTTAATACGTTTTTAGAACTTGTACAAATCGATTCTGAG
    ACAGGGAATGAATCAACAATCCAACCTATTTTAAAAGAAAAATTCATAGCATTAGGGTTA
    GATGTTAAAGAAGATGAAGCGGCTAAACATCCTAAATTAGGTGCCAATAATCTAGTGTGT
    ACAATGAAAAGTACTATCGAAGAAGGCGAAGTACCTAAATTATATTTGACGAGCCATATG
    GATACTGTTGTACCCGCAATTAATGTAAAGCCAATTGTAAAAGACGACGGCTACATATAC
    TCTGATGGTACGACTATTCTAGGTGCAGATGATAAAGCAGGATTAGCAGCGATGCTTGAA
    GTTTTGCAAGTGATAAAGGAGCAACAAATCCCACATGGACAAATTCAATTTGTGATTACT
    GTTGGAGAAGAATCAGGTTTAATTGGTGCTAAAGAATTAAATTCAGAGTTGTTGGACGCG
    GACTTTGGTTATGCTATTGATGCAAGTGCTGATGTCGGCACTACGGTTGTAGGTGCACCG
    ACGCAAATGTTAATTTCAGCTAAAATTATTGGCAAAACAGCTCATTCAAGTACGCCAAAA
    GAGGGTGTTAGTGCTATTAATATTGCGGCGAAAGCAATTAGTCGAATGAAATTAGGACAA
    GTTGATGAAATAACTACTGCCAATATTGGTAAGTTTCATGGCGGTTCAGCTACGAATATT
    GTTGCAGATGAAGTCATTTTAGAAGCAGAGGCACGTTCTCACGATCCAGAAAGAATAAAA
    ACACAAGTCAAACATATGACTGATGTGTTTGAAACTACTGCATCAGAATTAGGTGGGAAA
    GCAGTAGTAACAGTGGAGCAAAGTTATCCAGGATTTAAAATTAATGATAATGAAGCGGTA
    GTTAAAATTGCACAAGAAAGTGCTCGTAATTTAGGATTATCTGCAAATACAATTATTTCT
    GGTGGCGGTTCAGACGGCAGTATTATTAATACATTTGGTATTCCTCCAGTCATTTTAGGA
    GTGGGTTATGAAAAAATCCATACAACAAATGAGAGAATGCCGATTAAATCATTGAACTTG
    CTTGCAAGTCAAGTGTTAGAAATAATCAAAATAGTTGCGCGACAATCGAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1134

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001502
  • symbol: JSNZ_001502
  • description: tripeptidase T
  • length: 377
  • theoretical pI: 4.80116
  • theoretical MW: 40206.7
  • GRAVY: -0.0129973

⊟Function[edit | edit source]

  • TIGRFAM:
    peptidase T-like protein (TIGR01883; HMM-score: 401.8)
    and 14 more
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase, ArgE/DapE family (TIGR01910; EC 3.4.-.-; HMM-score: 109.9)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase T (TIGR01882; EC 3.4.11.-; HMM-score: 87.2)
    Metabolism Amino acid biosynthesis Glutamate family acetylornithine deacetylase (ArgE) (TIGR01892; EC 3.5.1.16; HMM-score: 86.2)
    Xaa-His dipeptidase (TIGR01893; EC 3.4.13.20; HMM-score: 79)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides amidohydrolase (TIGR01891; HMM-score: 76.7)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01900; EC 3.5.1.18; HMM-score: 68.9)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01246; EC 3.5.1.18; HMM-score: 56.6)
    N-acetyl-ornithine/N-acetyl-lysine deacetylase (TIGR01902; HMM-score: 40.7)
    putative selenium metabolism hydrolase (TIGR03526; HMM-score: 35.9)
    hydrolase, peptidase M42 family (TIGR03106; HMM-score: 24.6)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides dipeptidase PepV (TIGR01886; EC 3.4.13.-; HMM-score: 24.3)
    amidase, hydantoinase/carbamoylase family (TIGR01879; EC 3.5.-.-; HMM-score: 23.3)
    putative dipeptidase (TIGR01887; EC 3.4.13.-; HMM-score: 21.6)
    Metabolism Amino acid biosynthesis Aromatic amino acid family chorismate mutase (TIGR01801; EC 5.4.99.5; HMM-score: 12.7)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    ZnExoPePases (CL0865) Peptidase_M20; Peptidase family M20/M25/M40 (PF01546; HMM-score: 84.1)
    and 3 more
    Peptidase_M42; M42 glutamyl aminopeptidase (PF05343; HMM-score: 61.1)
    no clan defined M20_dimer; Peptidase dimerisation domain (PF07687; HMM-score: 52.3)
    ZnExoPePases (CL0865) Peptidase_M28; Peptidase family M28 (PF04389; HMM-score: 41.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9767
    • Cytoplasmic Membrane Score: 0.0033
    • Cell wall & surface Score: 0.0029
    • Extracellular Score: 0.017
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00457
    • TAT(Tat/SPI): 0.000435
    • LIPO(Sec/SPII): 0.000485
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MINEQRLLNTFLELVQIDSETGNESTIQPILKEKFIALGLDVKEDEAAKHPKLGANNLVCTMKSTIEEGEVPKLYLTSHMDTVVPAINVKPIVKDDGYIYSDGTTILGADDKAGLAAMLEVLQVIKEQQIPHGQIQFVITVGEESGLIGAKELNSELLDADFGYAIDASADVGTTVVGAPTQMLISAKIIGKTAHSSTPKEGVSAINIAAKAISRMKLGQVDEITTANIGKFHGGSATNIVADEVILEAEARSHDPERIKTQVKHMTDVFETTASELGGKAVVTVEQSYPGFKINDNEAVVKIAQESARNLGLSANTIISGGGSDGSIINTFGIPPVILGVGYEKIHTTNERMPIKSLNLLASQVLEIIKIVARQSK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=JSNZ_001502&oldid=107143"