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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001160
  • pan locus tag?: SAUPAN003462000
  • symbol: JSNZ_001160
  • pan gene symbol?: —
  • synonym:
  • product: RNA-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001160
  • symbol: JSNZ_001160
  • product: RNA-binding protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1159554..1160333
  • length: 780
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    GTGATTAACATAGATATTTATCAACACTTTAGACAGGAAGAATACGAATTAATTGATCAG
    CTAACGGATAAATGTGATCAAGCGGAACAGCATTATGCACCAGTATTAACGCATTTTTTA
    GATCCAAGAGGGCAATATATATTGGAAGTGATTTGTGGCAGTTATGAAGATTTAAACGTA
    TCTTTTTATGGTGGACCTAATGCTGAAAGAAAAAGAGCAATCATTTCGCCGAACTATTAT
    GAACCTAAAGAAAGCGACTTTGAATTAACTTTAATGGAAATAGATTATCCTGAAAAATTC
    GTCACTTTAAAACATCAACATATTTTAGGGACATTAATGTCTTTAGGTATCGAACGCGAA
    CAAGTTGGAGATATAATTGTGAATGAACGAATTCAATTTGTTTTGACAAGTAGATTGGAA
    TCATTTATTATGTTAGAATTACAACGTATTAAAGGCGCATCAGTTAAACTTTATACTATT
    CCAGTAACAGATATGATACAATCTAATGAGAATTGGAAAAATGAAAGTGCAACAGTTAGT
    TCTTTAAGGTTAGATGTTGTTATTAAAGAAATGATACGTAAATCACGTACGATTGCGAAA
    CAACTAATCGAAAAAAAACGTGTTAAAGTGAATCACACTATTGTTGATTCAGCAGATTTT
    CAATTACAAGCAAATGATTTAATATCCATCCAAGGTTTTGGTAGAGCACACATTACTGAC
    TTAGGTGGTAAAACTAAAAAAGATAAAACGCACATTACCTATAGAACATTATTCAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001160
  • symbol: JSNZ_001160
  • description: RNA-binding protein
  • length: 259
  • theoretical pI: 6.51879
  • theoretical MW: 30056.3
  • GRAVY: -0.370656

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Photosynthesis photosystem II S4 domain protein (TIGR03069; HMM-score: 92)
    and 3 more
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS4 (TIGR01017; HMM-score: 26)
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase, RluA family (TIGR00005; EC 5.4.99.-; HMM-score: 15.4)
    Unknown function General TlyA family rRNA methyltransferase/putative hemolysin (TIGR00478; HMM-score: 15.2)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    RRM (CL0221) YlmH_RBD; Putative RNA-binding domain in YlmH (PF17774; HMM-score: 107.8)
    and 4 more
    S4 (CL0492) S4; S4 domain (PF01479; HMM-score: 40.5)
    no clan defined YlmH_1st; YlmH, N-terminal (PF21278; HMM-score: 22.3)
    S4 (CL0492) SYY_C-terminal; Tyrosine--tRNA ligase SYY-like C-terminal domain (PF22421; HMM-score: 14.8)
    BCLiA (CL0551) M11L; Apoptosis regulator M11L like (PF11099; HMM-score: 11.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7173
    • Cytoplasmic Membrane Score: 0.2815
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.0005
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004583
    • TAT(Tat/SPI): 0.00045
    • LIPO(Sec/SPII): 0.000569
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVICGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELTLMEIDYPEKFVTLKHQHILGTLMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENWKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQGFGRAHITDLGGKTKKDKTHITYRTLFK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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