PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003462000
• symbol^?: —
• synonym:
• description^?: S4 RNA-binding protein

  descriptions from strain specific annotations:

  • S4 RNA-binding protein
  • RNA-binding domain protein YlmH
  • RNA-binding protein
  • YlmH protein
  • MW1074 protein
  • pseudogene
  • ribosomal protein S4
  • RNA-binding S4 domain-containing protein
  • RNA-binding S4 domain protein
  • S4 domain-containing protein YlmH
  • S4 RNA binding domain protein
• strand^?: +
• coordinates^?: 3805439..3806280
• synteny block^?: BlockID0025420
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1204 (ylmH)
N315:
SA1034
NCTC8325:
SAOUHSC_01156
Newman:
NWMN_1101
USA300_FPR3757:
SAUSA300_1085
04-02981:
SA2981_1149
08BA02176:
C248_1220
11819-97:
MS7_1148
6850:
RSAU_001072 (ylmH)
71193:
ST398NM01_1189
ECT-R 2:
ECTR2_1047
ED133:
SAOV_1192
ED98:
SAAV_1162
HO 5096 0412:
SAEMRSA15_10240
JH1:
SaurJH1_1275
JH9:
SaurJH9_1250
JKD6008:
SAA6008_01145
JKD6159:
SAA6159_01042
LGA251:
SARLGA251_11020
M013:
M013TW_1125
MRSA252:
SAR1167
MSHR1132:
SAMSHR1132_10330
MSSA476:
SAS1125
Mu3:
SAHV_1181
Mu50:
SAV1191
MW2:
MW1074
RF122:
SAB1055
ST398:
SAPIG1189
T0131:
SAT0131_01238 (glcU)
TCH60:
HMPREF0772_12041 (ylmH)
TW20:
SATW20_11850
USA300_TCH1516:
USA300HOU_1128
VC40:
SAVC_05120

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---------MINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVI
  N315            --------------------------------------------------------MEVI
  NCTC8325        MVFYNFFKVVINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVI
  Newman          MVFYNFFKVVINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVI
  USA300_FPR3757  MVFYNFFKVVINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVI
                                                                          :***
  
  COL             CGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELTLMEIDYPEKFVTLKHQHILGT
  N315            CGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELTLMEIEYPEKFVTLKHQHILGT
  NCTC8325        CGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELTLMEIDYPEKFVTLKHQHILGT
  Newman          CGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELSLMQIDYPEKFVTLKHQHILGT
  USA300_FPR3757  CGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELTLMEIDYPEKFVTLKHQHILGT
                  **************************************:**:*:****************
  
  COL             LMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNEN
  N315            LMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNEN
  NCTC8325        LMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNEN
  Newman          LMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNEN
  USA300_FPR3757  LMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNEN
                  ************************************************************
  
  COL             WKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQ
  N315            WKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQ
  NCTC8325        WKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQ
  Newman          WKNESATVSSLRLDVVIKYLIRKSRTIAKGGGEKKRVKVNHTIVDSADFQLQANDLISIQ
  USA300_FPR3757  WKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQ
                  ****************** :*********   ****************************
  
  COL             GFGRAHITDLGGKTKKDKTHITYRTLFK
  N315            GFGRAHITDLGGKTKKDKTHITYRTLFK
  NCTC8325        GFGRAHITDLGGKTKKDKTHITYRTLFK
  Newman          GFGRAHITDLGGKTKKDKTHITYRTLFK
  USA300_FPR3757  GFGRAHITDLGGKTKKDKTHITYRTLFK
                  ****************************