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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000839
- pan locus tag?: SAUPAN005090000
- symbol: JSNZ_000839
- pan gene symbol?: —
- synonym:
- product: dUTP diphosphatase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000839
- symbol: JSNZ_000839
- product: dUTP diphosphatase
- replicon: chromosome
- strand: +
- coordinates: 850727..851257
- length: 531
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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481ATGACTAACACATTACAAGTAAAACTATTATCAGAAAATGCTAGAATGCCCGAACGAAAT
CATAAGACAGATGCAGGTTATGACATATTCTCAGCCGAAACCGTCGTACTTGAGCCGCAA
GAAAAGGCAGTGATTAAAACAGATGTAGCTGTAAGTATACCAGAGGGCTATGTCGGGCTA
TTAACTAGCCGTAGTGGTGTAAGTAGTAAAACGTATTTAGTGATTGAAACAGGAAAGATA
GACGCGGGATATCATGGTAATTTAGGGATTAATATCAAGAATGATATGGAGCATGACGGC
ATAACATCATTATACGAAGATTTAGACGACAAACTAGTAAATACTTTAGATATAAAAGGT
AATTATATAAACGAAGGAGAAGGCGCTAGAAAGATATATAAAATCAACAAAGGCGACAAA
CTAGCTCAATTGGTTATCGTGCCTATATGGACACCGGAACTAAAGCAAGTGGAGGAATTC
GAGAGTGTTTCAGAACGTGGAGCAAAAGGCTTCGGAAGTAGCGGAGTGTAA60
120
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531
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000839
- symbol: JSNZ_000839
- description: dUTP diphosphatase
- length: 176
- theoretical pI: 4.78643
- theoretical MW: 19302.7
- GRAVY: -0.357386
⊟Function[edit | edit source]
- TIGRFAM: Purines, pyrimidines, nucleosides, and nucleotides 2'-Deoxyribonucleotide metabolism dUTP diphosphatase (TIGR00576; EC 3.6.1.23; HMM-score: 115.4)and 1 morePurines, pyrimidines, nucleosides, and nucleotides 2'-Deoxyribonucleotide metabolism deoxycytidine triphosphate deaminase (TIGR02274; EC 3.5.4.13; HMM-score: 33.7)
- TheSEED:
- PFAM: dUTPase (CL0153) dUTPase; dUTPase (PF00692; HMM-score: 90.1)and 2 moreDCD; dCTP deaminase-like (PF22769; HMM-score: 26.8)no clan defined NusG_add; NusG additional domain (PF18298; HMM-score: 14.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.8855
- Cytoplasmic Membrane Score: 0.0039
- Cell wall & surface Score: 0.0007
- Extracellular Score: 0.1099
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004958
- TAT(Tat/SPI): 0.000403
- LIPO(Sec/SPII): 0.000515
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MTNTLQVKLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTYLVIETGKIDAGYHGNLGINIKNDMEHDGITSLYEDLDDKLVNTLDIKGNYINEGEGARKIYKINKGDKLAQLVIVPIWTPELKQVEEFESVSERGAKGFGSSGV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000832 > JSNZ_000833 > JSNZ_000834 > JSNZ_000835 > JSNZ_000836 > JSNZ_000837 > JSNZ_000838 > JSNZ_000839 > JSNZ_000840 > JSNZ_000841 > JSNZ_000842 > JSNZ_000843 > JSNZ_000844 > JSNZ_000845
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)