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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000724
  • pan locus tag?: SAUPAN002662000
  • symbol: secA
  • pan gene symbol?: secA
  • synonym:
  • product: preprotein translocase subunit SecA

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000724
  • symbol: secA
  • product: preprotein translocase subunit SecA
  • replicon: chromosome
  • strand: +
  • coordinates: 758705..761236
  • length: 2532
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    ATGGGATTTTTATCAAAAATTCTTGATGGCAATAATAAAGAAATTAAACAGTTAGGTAAA
    CTTGCTGATAAAGTAATCGCTTTAGAAGAAAAAACGGCAATTTTAACTGATGAAGAAATT
    CGTAATAAAACGAAACAATTCCAAACAGAATTAGCTGACATTGATAATGTCAAAAAGCAA
    AATGATTATTTAGATAAAATTTTACCAGAAGCATATGCACTTGTTAGAGAAGGCTCTAAA
    CGTGTATTCAATATGACACCATATAAAGTTCAAATTATGGGTGGTATTGCAATTCATAAA
    GGTGATATCGCTGAGATGAGAACAGGTGAAGGTAAAACATTAACAGCGACAATGCCAACA
    TACTTAAATGCATTAGCTGGTAGAGGTGTTCACGTTATTACAGTCAATGAATACTTATCA
    AGTGTTCAAAGTGAAGAAATGGCTGAGTTATATAACTTCTTAGGTTTGACTGTCGGATTA
    AACTTAAACAGTAAGACGACAGAAGAAAAACGTGAAGCATACGCACAAGACATTACTTAC
    AGTACTAATAATGAGCTAGGTTTTGATTACTTACGAGATAACATGGTGAATTATTCTGAA
    GATAGAGTAATGCGTCCATTACATTTTGCAATCATTGATGAGGTTGACTCAATTTTAATC
    GACGAGGCACGTACGCCATTAATTATTTCTGGTGAAGCTGAAAAGTCAACGTCACTTTAT
    ACACAAGCAAATGTTTTTGCGAAAATGTTAAAACAGGACGAAGATTATAAATACGATGAA
    AAAACGAAAGCTGTACATTTAACAGAACAAGGTGCGGATAAAGCTGAACGTATGTTCAAA
    GTTGAAAACTTATATGATGTACAAAATGTTGATGTTATTAGTCATATCAACACAGCTTTA
    CGTGCGCACGTTACATTACAACGTGACGTAGACTATATGGTTGTTGATGGCGAAGTATTA
    ATTGTCGATCAATTTACAGGACGTACAATGCCAGGCCGTCGTTTCTCGGAAGGTTTACAC
    CAAGCTATTGAAGCGAAGGAAGGCGTTCAAATTCAAAATGAATCTAAAACTATGGCGTCT
    ATTACATTCCAAAACTATTTCAGAATGTACAATAAACTTGCAGGTATGACAGGTACAGCT
    AAAACTGAAGAAGAAGAATTTAGAAATATTTATAACATGACAGTAACTCAAATTCCGACA
    AATAAACCTGTGCAACGTAACGATAAGTCTGATTTAATTTACATTAGCCAAAAAGGTAAA
    TTTGATGCAGTAGTAGAAGATGTTGTTGAAAAACACAAGGCAGGGCAACCAGTGCTATTA
    GGTACTGTTGCAGTTGAGACTTCTGAATATATTTCAAATTTACTTAAAAAACGTGGTATC
    CGTCATGATGTGTTAAATGCGAAAAATCATGAACGTGAAGCTGAAATTGTTGCAGGCGCT
    GGACAAAAAGGTGCCGTTACTATTGCCACTAACATGGCTGGTCGTGGTACAGATATCAAA
    TTAGGTGAAGGCGTAGAGGAATTAGGCGGTTTAGCAGTAATAGGTACAGAACGACATGAA
    TCTCGTCGTATTGATGACCAGTTACGTGGTCGTTCTGGACGTCAAGGTGATAAAGGGGAT
    AGTCGCTTCTATTTATCATTACAAGATGAATTAATGATTCGTTTTGGTTCTGAACGTTTA
    CAGAAAATGATGAGCCGACTAGGTTTAGATGACTCTACACCAATTGAATCAAAAATGGTA
    TCAAGAGCTGTAGAATCAGCACAAAAACGTGTAGAAGGTAATAACTTCGACGCGCGTAAA
    CGTATCTTAGAATACGATGAAGTATTACGTAAACAACGTGAAATTATCTATAACGAAAGA
    AATAGTATTATTGATGAAGAAGACAGCTCTCAAGTTGTAGATGCAATGCTACGTTCAACG
    TTACAACGTAGTATCAATTACTATATTAATACAGCAGATGACGAGCCTGAATATCAACCA
    TTCATCGACTACATTAATGACATCTTCTTACAAGAAGGTGACATTACAGAGGATGATATC
    AAAGGTAAAGATGCTGAAGATATTTTCGAAGTCGTTTGGGCTAAGATTGAAGCAGCATAT
    CAAAGTCAAAAAGATATCTTAGAAGAACAAATGAATGAGTTTGAGCGTATGATTTTACTT
    CGTTCTATTGATAGCCATTGGACTGATCATATCGACACAATGGATCAATTACGTCAAGGT
    ATTCACTTACGTTCTTATGCACAGCAAAATCCATTACGTGACTATCAAAATGAAGGTCAT
    GAATTATTTGATATCATGATGCAAAATATTGAAGAAGATACTTGTAAATTCATTTTAAAA
    TCTGTAGTACAAGTTGAAGATAATATTGAACGTGAAAAAACAACAGAGTTTGGTGAAGCG
    AAGCACGTTTCAGCTGAAGATGGTAAAGAAAAAGTGAAACCGAAACCAATCGTTAAAGGC
    GATCAAGTTGGTCGTAACGATGATTGTCCATGTGGTAGTGGTAAAAAATTCAAAAATTGC
    CATGGAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2532

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000724
  • symbol: SecA
  • description: preprotein translocase subunit SecA
  • length: 843
  • theoretical pI: 4.86612
  • theoretical MW: 95959.5
  • GRAVY: -0.62242

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein and peptide secretion and trafficking preprotein translocase, SecA subunit (TIGR00963; HMM-score: 1129)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking accessory Sec system translocase SecA2 (TIGR04397; HMM-score: 933.2)
    and 3 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking accessory Sec system translocase SecA2 (TIGR03714; HMM-score: 852)
    accessory Sec system translocase SecA2 (TIGR04221; HMM-score: 615.2)
    SWIM/SEC-C metal-binding motif protein, PBPRA1643 family (TIGR04102; HMM-score: 25)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    P-loop_NTPase (CL0023) SecA_DEAD; SecA DEAD-like domain (PF07517; HMM-score: 401.4)
    and 8 more
    P-loop_SecA; SecA P-loop domain (PF21090; HMM-score: 257.8)
    no clan defined SecA_SW; SecA Wing and Scaffold domain (PF07516; HMM-score: 207.9)
    P-loop_NTPase (CL0023) SecA_PP_bind; SecA preprotein cross-linking domain (PF01043; HMM-score: 146.7)
    C4-like (CL0821) SEC-C; SEC-C motif (PF02810; HMM-score: 34.1)
    P-loop_NTPase (CL0023) DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 29.8)
    no clan defined DUF6429; Domain of unknown function (DUF6429) (PF20008; HMM-score: 17.2)
    P-loop_NTPase (CL0023) Helicase_C; Helicase conserved C-terminal domain (PF00271; HMM-score: 17.1)
    no clan defined DUF5663; Protein of unknown function (DUF5663) (PF18908; HMM-score: 10.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.4865
    • Cytoplasmic Membrane Score: 0.4847
    • Cell wall & surface Score: 0.0034
    • Extracellular Score: 0.0254
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001789
    • TAT(Tat/SPI): 0.000231
    • LIPO(Sec/SPII): 0.000414
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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