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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000648
- pan locus tag?: SAUPAN002564000
- symbol: JSNZ_000648
- pan gene symbol?: —
- synonym:
- product: TIGR00730 family Rossman fold protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000648
- symbol: JSNZ_000648
- product: TIGR00730 family Rossman fold protein
- replicon: chromosome
- strand: -
- coordinates: 681545..682111
- length: 567
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541ATGAAACGAATCGCAGTTTATTGTGGTGCAAGCAAAGGTCATGACCCTTCATATGTACAA
AAAGCATACGATTTAGGTAACTATTTTGCTGAACAAGGTTATGAATTAGTATTTGGTGCA
GGGTCAATTGGTATTATGGGTGCCATTCAAGATGGTGTATTAGATCATGGCGGCAAAGCT
ATTGGCGTCATGCCTAAAATGTTAGATGAACATGAAATCACAAGCCAACGTTTAACTGAA
TTAATTTTAGTTGATTCTATGCATGAACGTAAAAATAAAATGGCAGAACTTGCAGATGCA
TTTGTCATGGCTCCTGGTGGCGCAGGTTCACTAGAAGAATTTTTCGAAATGTATAGTTGG
GCTCAAATAGGTATCCATGAAAAGCCTATTGCCATTTATAATATTAATGGCTTTTTCAAT
CCACTACAAACAATGATTGACCATATGATTGAGGAAGGTTTTATTGATCCTAAGTATCGT
GCTCTTGCACCGTTATGCGACACTAAGGAATCATTAATAGAATCAATATTAAATTTCAAA
CCTCTGGGTACTCGTTCATACGATTAA60
120
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567
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000648
- symbol: JSNZ_000648
- description: TIGR00730 family Rossman fold protein
- length: 188
- theoretical pI: 4.75801
- theoretical MW: 20874.8
- GRAVY: -0.112766
⊟Function[edit | edit source]
- TIGRFAM: Hypothetical proteins Conserved TIGR00730 family protein (TIGR00730; HMM-score: 197.3)and 3 moreHypothetical proteins Conserved TIGR00725 family protein (TIGR00725; HMM-score: 36.3)Cellular processes DNA transformation DNA protecting protein DprA (TIGR00732; HMM-score: 12.3)gliding motility-associated lipoprotein GldK (TIGR03525; HMM-score: 10.9)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: SLOG (CL0349) Lysine_decarbox; Possible lysine decarboxylase (PF03641; HMM-score: 165.3)and 1 moreLDcluster4; SLOG cluster4 family (PF18306; HMM-score: 57.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9918
- Cytoplasmic Membrane Score: 0.0002
- Cell wall & surface Score: 0
- Extracellular Score: 0.0079
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.017622
- TAT(Tat/SPI): 0.000218
- LIPO(Sec/SPII): 0.000939
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MKRIAVYCGASKGHDPSYVQKAYDLGNYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000648 < JSNZ_000649 < JSNZ_000650
⊟Regulation[edit | edit source]
- regulator: SigB (activation) regulon
SigB (sigma factor) controlling a large regulon involved in stress/starvation response and adaptation; regulation predicted or transferred from N315 and NCTC 8325 in Wolfgramm et al. (https://doi.org/10.1101/2025.09.03.674026) other strains
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)