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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000575
  • pan locus tag?: SAUPAN002472000
  • symbol: JSNZ_000575
  • pan gene symbol?: —
  • synonym:
  • product: DUF1934 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000575
  • symbol: JSNZ_000575
  • product: DUF1934 domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 610832..611248
  • length: 417
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    TTGGATAAAAAAGTAAGTATTCAAACAAAGCAAGTGTTGAAACAGCACAACGAAAAAGAA
    AAATTTGAATTTACTACTGAAGGAACTTGGCAACAAAGGCAATCTAACTTTATTCGGTAT
    GTAGAACAAATTGAGGATGCAACAGTTAATGTTACAATAAAAGTGGATGATGATAGCGTT
    AAGTTGATTCGTAAAGGCGACATTAATATGAATTTGCATTTTGTTGAAGGACAAACGACA
    ACAACTTTTTACGATATATCGGCTGGACGAATTCCACTAGAAGTTAAAACATTACGCATT
    TTACATTTCGTAAGTGGAGACGGTGGCAAGCTAAAGATTCATTATGAATTATATCAAGAT
    AATGAAAAAATGGGTTCTTATCAATATGAAATTAACTATAAGGAGATAGGCGAATGA
    60
    120
    180
    240
    300
    360
    417

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000575
  • symbol: JSNZ_000575
  • description: DUF1934 domain-containing protein
  • length: 138
  • theoretical pI: 6.11943
  • theoretical MW: 16183.1
  • GRAVY: -0.736232

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    Calycin (CL0116) DUF1934; Domain of unknown function (DUF1934) (PF09148; HMM-score: 108.1)
    and 4 more
    EF_hand (CL0220) EF-hand_FSTL1; Follistatin-related protein 1, EF-hand domain pair (PF23564; HMM-score: 15.3)
    Calycin (CL0116) DUF4488; Domain of unknown function (DUF4488) (PF14869; HMM-score: 15.2)
    Gal_mutarotase (CL0103) AmyA-gluTrfs_C; Alpha-amylase/4-alpha-glucanotransferase, C-terminal (PF09095; HMM-score: 14.6)
    Cupin (CL0029) Cupin_3; EutQ-like cupin domain (PF05899; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9849
    • Cytoplasmic Membrane Score: 0.0139
    • Cell wall & surface Score: 0.0006
    • Extracellular Score: 0.0006
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003835
    • TAT(Tat/SPI): 0.000368
    • LIPO(Sec/SPII): 0.000662
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MDKKVSIQTKQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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