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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000575
- pan locus tag?: SAUPAN002472000
- symbol: JSNZ_000575
- pan gene symbol?: —
- synonym:
- product: DUF1934 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000575
- symbol: JSNZ_000575
- product: DUF1934 domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 610832..611248
- length: 417
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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361TTGGATAAAAAAGTAAGTATTCAAACAAAGCAAGTGTTGAAACAGCACAACGAAAAAGAA
AAATTTGAATTTACTACTGAAGGAACTTGGCAACAAAGGCAATCTAACTTTATTCGGTAT
GTAGAACAAATTGAGGATGCAACAGTTAATGTTACAATAAAAGTGGATGATGATAGCGTT
AAGTTGATTCGTAAAGGCGACATTAATATGAATTTGCATTTTGTTGAAGGACAAACGACA
ACAACTTTTTACGATATATCGGCTGGACGAATTCCACTAGAAGTTAAAACATTACGCATT
TTACATTTCGTAAGTGGAGACGGTGGCAAGCTAAAGATTCATTATGAATTATATCAAGAT
AATGAAAAAATGGGTTCTTATCAATATGAAATTAACTATAAGGAGATAGGCGAATGA60
120
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417
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000575
- symbol: JSNZ_000575
- description: DUF1934 domain-containing protein
- length: 138
- theoretical pI: 6.11943
- theoretical MW: 16183.1
- GRAVY: -0.736232
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: Calycin (CL0116) DUF1934; Domain of unknown function (DUF1934) (PF09148; HMM-score: 108.1)and 4 moreEF_hand (CL0220) EF-hand_FSTL1; Follistatin-related protein 1, EF-hand domain pair (PF23564; HMM-score: 15.3)Calycin (CL0116) DUF4488; Domain of unknown function (DUF4488) (PF14869; HMM-score: 15.2)Gal_mutarotase (CL0103) AmyA-gluTrfs_C; Alpha-amylase/4-alpha-glucanotransferase, C-terminal (PF09095; HMM-score: 14.6)Cupin (CL0029) Cupin_3; EutQ-like cupin domain (PF05899; HMM-score: 13)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9849
- Cytoplasmic Membrane Score: 0.0139
- Cell wall & surface Score: 0.0006
- Extracellular Score: 0.0006
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003835
- TAT(Tat/SPI): 0.000368
- LIPO(Sec/SPII): 0.000662
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MDKKVSIQTKQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000575 > argS
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)