Jump to navigation
Jump to search
FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000149
- pan locus tag?: SAUPAN001063000
- symbol: JSNZ_000149
- pan gene symbol?: —
- synonym:
- product: M23 family metallopeptidase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000149
- symbol: JSNZ_000149
- product: M23 family metallopeptidase
- replicon: chromosome
- strand: +
- coordinates: 180146..180724
- length: 579
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541ATGACAAAGCGACCAAAACGTATTTTGGCAACAATTATCATTTTTCTTTCACTATTATTT
ACGATTATTTATATAGATGACATTCAAAAATGGTTTAACCAATATACCGATAAATTGACA
CAAAATTATAAAGGACAAGGACACTCAAAATGGGAAGACTTTTTTAGAGGGAGTCGGATT
ACTGAGACTTTTGGTAAATATCAACATTCACCATTTGATGGTAAGCATTATGGCGTTGAT
TTTGCATTGCCAAAAGGTACACCAATTAAAGCGCCGACGAATGGTAAAGTAACACGTATC
TTTAATAATGAATTAGGCGGCAAGGTATTACAGATTGCCGAAGACAATGGAGAATATCAC
CAGTGGTATCTACACTTAGACAAATATAATGTCAAAGTAGGTGATCGAGTCAAAGCAGGT
GATATTATTGCATATTCAGGCAATACAGGTAAACAAACGACAGGCGCACATTTACATTTT
CAAAGAATGAAGGGTGGCGTAGGTAATGCATATGCAGAAGATCCAAAACCGTTTATCGAT
CAGTTACCTGATGGGGAACGTAGCCTATATGATTTGTAG60
120
180
240
300
360
420
480
540
579
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000149
- symbol: JSNZ_000149
- description: M23 family metallopeptidase
- length: 192
- theoretical pI: 9.65057
- theoretical MW: 21962.7
- GRAVY: -0.621875
⊟Function[edit | edit source]
- reaction: EC 3.4.24.-? ExPASy
- TIGRFAM: ABC exporter membrane fusion protein, DevB family (TIGR02971; HMM-score: 10.2)Transcription DNA-dependent RNA polymerase DNA-directed RNA polymerase, beta' subunit (TIGR02386; EC 2.7.7.6; HMM-score: 9.1)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: Hybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 95.6)and 6 moreBiotin_lipoyl_2; Biotin-lipoyl like (PF13533; HMM-score: 20.7)Apocytochr_F_C; Apocytochrome F, C-terminal (PF01333; HMM-score: 17)Biotin_lipoyl; Biotin-requiring enzyme (PF00364; HMM-score: 15.8)RnfC_N; RnfC Barrel sandwich hybrid domain (PF13375; HMM-score: 14.3)no clan defined DUF2232; Predicted membrane protein (DUF2232) (PF09991; HMM-score: 12.3)HPIH; N-terminal domain with HPIH motif (PF13323; HMM-score: 11.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 0.09
- Cellwall Score: 0.18
- Extracellular Score: 9.72
- Internal Helix: 1
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0034
- Cytoplasmic Membrane Score: 0.6058
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.3904
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.193253
- TAT(Tat/SPI): 0.000752
- LIPO(Sec/SPII): 0.012006
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MTKRPKRILATIIIFLSLLFTIIYIDDIQKWFNQYTDKLTQNYKGQGHSKWEDFFRGSRITETFGKYQHSPFDGKHYGVDFALPKGTPIKAPTNGKVTRIFNNELGGKVLQIAEDNGEYHQWYLHLDKYNVKVGDRVKAGDIIAYSGNTGKQTTGAHLHFQRMKGGVGNAYAEDPKPFIDQLPDGERSLYDL
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.