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NCBI: 22-FEB-2026

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: EGJ38_RS07225 [old locus tag: EGJ38_001447 ]
  • pan locus tag?: SAUPAN003922000
  • symbol: EGJ38_RS07225
  • pan gene symbol?: —
  • synonym:
  • product: YpiB family protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EGJ38_RS07225 [old locus tag: EGJ38_001447 ]
  • symbol: EGJ38_RS07225
  • product: YpiB family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1494219..1494794
  • length: 576
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NZ_CM129921 (1494219..1494794) NCBI
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGTCAGAGACACTCAATCAAATTAAAGAAAGTTTTATTGAATATTTACTTTTTCAATAT
    CGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAA
    TTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCA
    GAAGTGGGAAGTCACGCTTCTGCAATTCAATTTACTAAGCGTAATATAAAGTTAATGAAT
    ACAAATGAAATATTTGATTATATCGCTAATCATAACTGTGCTTTTGATATTCAAATTCAC
    TTCGCAAACGTGTCAAAGCGTGAGCAAAGGCTAGATGATTTAATAGTTGCTCAACTAACG
    GAATCGCCCAGTTATCAAACTTATCTTCATGACTTAAATAGTATGGCTATAGATCGGCAT
    AAACATGCGTTATTAATAGATTACTTGTTACACAATATTGATTTAAGTTTACAGATGAAT
    GAAAAGCAACGTTTTTATCAACTAACGCAAATTTTAAATACACTCAAGCTAGTAAATAAA
    CATAATCAATTTGAGGACTTAGCAGATGACGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    576


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EGJ38_RS07225 [old locus tag: EGJ38_001447 ]
  • symbol: EGJ38_RS07225
  • description: YpiB family protein
  • length: 191
  • theoretical pI: 6.4331
  • theoretical MW: 22563.5
  • GRAVY: -0.348691

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined UPF0302; UPF0302 domain (PF08864; HMM-score: 102)
    and 3 more
    IDEAL; IDEAL domain (PF08858; HMM-score: 35.5)
    HTH (CL0123) E2F_TDP; E2F/DP family winged-helix DNA-binding domain (PF02319; HMM-score: 15.4)
    no clan defined DUF1433; Protein of unknown function (DUF1433) (PF07252; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.6803
    • Cytoplasmic Membrane Score: 0.3034
    • Cell wall & surface Score: 0.0023
    • Extracellular Score: 0.014
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002207
    • TAT(Tat/SPI): 0.000194
    • LIPO(Sec/SPII): 0.000269
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000005212 NCBI
  • UniProt:

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSETLNQIKESFIEYLLFQYRFKSRIAVWVLNYIKVNEAKLANIHFVDTKINHHETLEIAEVGSHASAIQFTKRNIKLMNTNEIFDYIANHNCAFDIQIHFANVSKREQRLDDLIVAQLTESPSYQTYLHDLNSMAIDRHKHALLIDYLLHNIDLSLQMNEKQRFYQLTQILNTLKLVNKHNQFEDLADDD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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