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NCBI: 22-FEB-2026
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: EGJ38_RS00865 [old locus tag: EGJ38_000172 ]
- pan locus tag?: SAUPAN001096000
- symbol: fadX
- pan gene symbol?: fadX
- synonym:
- product: fatty acid degradation protein FadX
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: EGJ38_RS00865 [old locus tag: EGJ38_000172 ]
- symbol: fadX
- product: fatty acid degradation protein FadX
- replicon: chromosome
- strand: -
- coordinates: 210521..212083
- length: 1563
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NZ_CM129921 (210521..212083) NCBI
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1561TTGAAACAAATCACATGGCACGACTTACAACATATCATTAAAGATGGTGATGTGATTGGT
TTACCAGCATTAGCTGTAGCCAACTTACCCGCCGAAGTTCTACGTGCTGTGTTAGCGCAA
CATGACACATATCATACGCCCAATGATTTAACGTTTATATTAGCGAATGATATCCATAGT
TTAGGTGCCGCACCGGATTTAGATGATTTTATAGAACGTCGCATGATTAAACGTGTCATT
ATGAGCATTTTAACGGCTTCTTCCAAAACGGCACAAGCAATGAAAAATAATGACATTGAA
GCTTATTTTTTACCACAAGGTATCATTGCAACTCATTATCGTCAGAGTAATCAATTATTA
CCTGGAGTTATTACTAAAATAGGATTAAACACAGCTGTTGATCCTAGATACGGTGGCGGT
AAAGTAAATACACGAACAACTGATGATTTAGTTTCATTAGTAACCATCAACGATGAAACA
TACTTACATTACACATTCCCTAGCGTTGATGTGGCACTACTGAGAGGAACATACGCAGAT
CAACAAGGTAACATTTATTTAACTCAAGAAGCGTACTTGAGCGAGTGTTATCATGTCGCA
TTAAACACGAAAGCCAATCATGGGAAAGTTATTGTACAAGTTAAAGCTTTAGTTGACGAC
TATCAACTAAAACCGAATGAAGTTGTTATCCCAGGAAATCTTGTCGATTATGTATACGTC
ACAGAAGATGAAAAGAATCACCGCCAAGTAATTCAGAGTCATTATTTACCAGCCTTGTCT
GGAGAAGAACGAATTGATGGAATACCTGAACCCGCATTACCTTTTAATAGTCGCAAATTG
ATTCTCCGACGTGCTGCTCAGTTTTTAACTTATGGCGATACAATTAGCATCGGTTATGGA
ATCAATAATGAACTCTCTAATTTATTGCATGAAGAATGTGTTGAACATGATGTGCAACCG
ATTCTAGATGTTGGCATTTTCGGTGGATTCGTTGGGAGTCGTGAACATTTTGGTATGAAT
TACAATGCAGATGTGCGCATGCCTCATGATCGAGCATGGGATTTTATTTATAACAATGGT
GTATCAGTTGCCTATCTTAGCTTTGCTGAGGTTGATCAATACGGCAATGTCAACGTGTCT
TACTTCAATGACCGACTAAATGGATGTGGCGGCTTTATAGACATTACGCAATCTGTAAAT
AAAATTATCTTTTCAGGTACTTTTGTAGCTGGCAGTCATGTCTCATGCCATAATCAACGA
TTAAACATTGAAACTGAAGGACAAAACCAGAAATTTGTATCAGATGTGAGCCATATCGAC
TTTAATGCACAATATTCACAATCACTCGAGCAAGAAGTCTATTTTGTTACTGATCGTGCA
GTATTCGAACTCACCAATCAAGGCTTGAAACTAATTGAAATTGCACCAGGTCTTGATTTG
CATAAAGATATTTTGAATCAAATGGCTTTTAAACCAATTATTGCTGATCATTTAAAATTA
ATTGATACCAGCATTTACAAAGAAAAATGGGGACAACTTAAACAATCAATTCATAAAGTA
TGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: EGJ38_RS00865 [old locus tag: EGJ38_000172 ]
- symbol: FadX
- description: fatty acid degradation protein FadX
- length: 520
- theoretical pI: 5.61767
- theoretical MW: 58346.6
- GRAVY: -0.182308
⊟Function[edit | edit source]
- TIGRFAM: 3-oxoacid CoA-transferase, A subunit (TIGR02429; EC 2.8.3.-; HMM-score: 38.3)and 3 more3-oxoacid CoA-transferase, B subunit (TIGR02428; EC 2.8.3.-; HMM-score: 26.6)Transport and binding proteins Cations and iron carrying compounds malonate decarboxylase, alpha subunit (TIGR01110; HMM-score: 23.9)Energy metabolism Other malonate decarboxylase, alpha subunit (TIGR01110; HMM-score: 23.9)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: NADP_Rossmann (CL0063) CoA_trans; Coenzyme A transferase (PF01144; HMM-score: 58.3)and 3 moreMal_decarbox_Al; Malonate decarboxylase, alpha subunit, transporter (PF16957; HMM-score: 21.7)AcetylCoA_hydro; Acetyl-CoA hydrolase/transferase N-terminal domain (PF02550; HMM-score: 16.9)no clan defined Curlin_rpt; Curlin associated repeat (PF07012; HMM-score: 13.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.965
- Cytoplasmic Membrane Score: 0.0194
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.0153
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.026186
- TAT(Tat/SPI): 0.003932
- LIPO(Sec/SPII): 0.001037
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000810042 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPNDLTFILANDIHSLGAAPDLDDFIERRMIKRVIMSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQSNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVTINDETYLHYTFPSVDVALLRGTYADQQGNIYLTQEAYLSECYHVALNTKANHGKVIVQVKALVDDYQLKPNEVVIPGNLVDYVYVTEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTISIGYGINNELSNLLHEECVEHDVQPILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDFIYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDITQSVNKIIFSGTFVAGSHVSCHNQRLNIETEGQNQKFVSDVSHIDFNAQYSQSLEQEVYFVTDRAVFELTNQGLKLIEIAPGLDLHKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: CcpA see EGJ38_000172
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]