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NCBI: 01-DEC-2025

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: EGJ38_001233 [new locus tag: EGJ38_RS06160 ]
  • pan locus tag?: SAUPAN003562000
  • symbol: cdsA
  • pan gene symbol?: cdsA
  • synonym:
  • alternate name: JSNZ_001233
  • product: phosphatidate cytidylyltransferase

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EGJ38_001233 [new locus tag: EGJ38_RS06160 ]
  • symbol: cdsA
  • product: phosphatidate cytidylyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 1239853..1240635
  • length: 783
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq: MGT2423198 NCBI
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAAGTTAGAACGCTGACAGCTATTATTGCCTTAATCGTATTCTTGCCTATCTTGTTA
    AAAGGCGGCCTTGTGTTAATGATATTTGCTAATATATTAGCATTGATTGCATTAAAAGAA
    TTGTTGAATATGAATATGATTAAATTTGTTTCAGTTCCTGGTTTAATTAGTGCAGTTGGT
    CTTATCATCATTATGTTGCCACAACATGCAGGGCCATGGGTACAAGTAATTCAATTAAAA
    AGTTTAATTGCAATGAGCTTTATTGTATTAAGTTATACTGTCTTATCTAAAAACAGATTT
    AGTTTTATGGATGCTGCATTTTGCTTAATGTCTGTGGCTTATGTAGGCATTGGTTTTATG
    TTCTTTTATGAAACGAGATCAGAAGGATTACATTACATATTATATGCCTTTTTAATTGTT
    TGGCTTACAGATACAGGGGCTTACTTATTTGGTAAAATGATGGGCAAACATAAGCTTTGG
    CCAGTAATAAGTCCGAATAAGACAATCGAAGGATTCATAGGTGGCTTGTTCTGTAGTTTG
    ATAGTGCCTCTTGCAATGTTATATTTTGTAGATTTCAATATGAATGTATGGATATTACTT
    GGAGTGACATTGATTTTAAGTTTATTTGGTCAATTAGGTGATTTAGTGGAATCAGGATTT
    AAGCGTCATTTCGGCGTTAAAGACTCAGGTCGAATACTACCTGGACACGGTGGTATTTTA
    GACCGATTTGACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCT
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    783


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EGJ38_001233 [new locus tag: EGJ38_RS06160 ]
  • symbol: CdsA
  • description: phosphatidate cytidylyltransferase
  • length: 260
  • theoretical pI: 9.75357
  • theoretical MW: 28964.1
  • GRAVY: 1.03

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.7.41?  ExPASy
    Phosphatidate cytidylyltransferase CTP + phosphatidate = diphosphate + CDP-diacylglycerol
  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    CTPT (CL0234) CTP_transf_1; Cytidylyltransferase family (PF01148; HMM-score: 262.5)
    and 1 more
    GPCR_A (CL0192) DUF3522; Protein of unknown function (DUF3522) (PF12036; HMM-score: 9.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9982
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0017
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005451
    • TAT(Tat/SPI): 0.000113
    • LIPO(Sec/SPII): 0.01575
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: MGT2423198 NCBI
  • UniProt:

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKVRTLTAIIALIVFLPILLKGGLVLMIFANILALIALKELLNMNMIKFVSVPGLISAVGLIIIMLPQHAGPWVQVIQLKSLIAMSFIVLSYTVLSKNRFSFMDAAFCLMSVAYVGIGFMFFYETRSEGLHYILYAFLIVWLTDTGAYLFGKMMGKHKLWPVISPNKTIEGFIGGLFCSLIVPLAMLYFVDFNMNVWILLGVTLILSLFGQLGDLVESGFKRHFGVKDSGRILPGHGGILDRFDSFMFVLPLLNILLIQS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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