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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1171 [new locus tag: NWMN_RS06605 ]
  • pan locus tag?: SAUPAN003562000
  • symbol: cdsA
  • pan gene symbol?: cdsA
  • synonym:
  • product: phosphatidate cytidylyltransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1171 [new locus tag: NWMN_RS06605 ]
  • symbol: cdsA
  • product: phosphatidate cytidylyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 1285189..1285971
  • length: 783
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAAGTTAGAACGCTGACAGCTATTATTGCCTTAATCGTATTCTTGCCTATCTTGTTA
    AAAGGCGGCCTTGTGTTAATGATATTTGCTAATATATTAGCATTGATTGCATTAAAAGAA
    TTGTTGAATATGAATATGATTAAATTTGTTTCAGTTCCTGGTTTAATTAGTGCAGTTGGT
    CTTATCATCATTATGTTGCCACAACATGCAGGGCCATGGGTACAAGTAATTCAATTAAAA
    AGTTTAATTGCAATGAGCTTTATTGTATTAAGTTATACTGTCTTATCTAAAAACAGATTT
    AGTTTTATGGATGCTGCATTTTGCTTAATGTCTGTGGCTTATGTAGGCATTGGTTTTATG
    TTCTTTTATGAAACGAGATCAGAAGGATTACATTACATATTATATGCCTTTTTAATTGTT
    TGGCTTACAGATACAGGGGCTTACTTGTTTGGTAAAATGATGGGTAAACATAAGCTTTGG
    CCAGTAATAAGTCCGAATAAAACAATCGAAGGATTCATAGGTGGCTTGTTCTGTAGTTTG
    ATAGTACCACTTGCAATGTTATATTTTGTAGATTTCAATATGAATGTATGGATATTACTT
    GGAGTGACATTGATTTTAAGTTTATTTGGTCAATTAGGTGATTTAGTGGAATCAGGATTT
    AAGCGTCATTTCGGCGTTAAAGACTCAGGTCGAATACTACCTGGACACGGTGGTATTTTA
    GACCGATTTGACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCT
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    783

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1171 [new locus tag: NWMN_RS06605 ]
  • symbol: CdsA
  • description: phosphatidate cytidylyltransferase
  • length: 260
  • theoretical pI: 9.75357
  • theoretical MW: 28964.1
  • GRAVY: 1.03

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.7.41?  ExPASy
    Phosphatidate cytidylyltransferase CTP + phosphatidate = diphosphate + CDP-diacylglycerol
  • TIGRFAM:
  • TheSEED  :
    • Phosphatidate cytidylyltransferase (EC 2.7.7.41)
    Fatty Acids, Lipids, and Isoprenoids Phospholipids Glycerolipid and Glycerophospholipid Metabolism in Bacteria  Phosphatidate cytidylyltransferase (EC 2.7.7.41)
  • PFAM:
    CTPT (CL0234) CTP_transf_1; Cytidylyltransferase family (PF01148; HMM-score: 262.5)
    and 1 more
    GPCR_A (CL0192) DUF3522; Protein of unknown function (DUF3522) (PF12036; HMM-score: 9.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9982
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0017
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005451
    • TAT(Tat/SPI): 0.000113
    • LIPO(Sec/SPII): 0.01575
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKVRTLTAIIALIVFLPILLKGGLVLMIFANILALIALKELLNMNMIKFVSVPGLISAVGLIIIMLPQHAGPWVQVIQLKSLIAMSFIVLSYTVLSKNRFSFMDAAFCLMSVAYVGIGFMFFYETRSEGLHYILYAFLIVWLTDTGAYLFGKMMGKHKLWPVISPNKTIEGFIGGLFCSLIVPLAMLYFVDFNMNVWILLGVTLILSLFGQLGDLVESGFKRHFGVKDSGRILPGHGGILDRFDSFMFVLPLLNILLIQS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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