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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS08220 [old locus tag: SA1458 ]
  • pan locus tag?: SAUPAN004237000
  • symbol: SA_RS08220
  • pan gene symbol?: lytH
  • synonym:
  • product: cell wall amidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS08220 [old locus tag: SA1458 ]
  • symbol: SA_RS08220
  • product: cell wall amidase
  • replicon: chromosome
  • strand: -
  • coordinates: 1664301..1665176
  • length: 876
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1664301..1665176) NCBI
  • BioCyc: SA_RS08220 BioCyc
  • MicrobesOnline: see SA1458

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATAAAAAAAATAGAGGCATGGTTATCTAAAAAGGGTCTTAAAAATAAACGTACTCTAATA
    GTAGTGATTGCCTTTGTCTTATTTATCATCTTTTTATTTTTATTGCTGAATAGCAATAGT
    GAAGATAGTGGGAACATCACGATAACTGAAAATGCTGAATTACGTACAGGTCCAAACGCT
    GCGTATCCAGTCATATATAAAGTTGAGAAAGGTGACCATTTTAAAAAGATTGGTAAAGTA
    GGTAAATGGATTGAAGTTGAAGATACATCCAGTAATGAAAAAGGTTGGATAGCTGGATGG
    CACACAAATTTAGATATTGTCGCGGATAATACGAAGGAGAAAAATCCTTTGCAAGGTAAA
    ACAATAGTGCTTGATCCTGGTCATGGAGGTAGTGACCAGGGTGCTTCAAGCAATACTAAA
    TATAAAAGTTTAGAAAAAGACTATACGTTGAAAACAGCAAAAGAATTGCAGCGTACTTTA
    GAAAAAGAAGGCGCAACTGTTAAGATGACAAGAACAGACGATACATATGTTTCACTAGAA
    AATCGTGATATCAAAGGCGATGCCTATTTGAGTATACATAATGATGCATTAGAATCATCT
    AATGCAAATGGAATGACAGTTTATTGGTATCATGATAATCAAAGAGCTTTAGCAGATACG
    TTAGACGCTACGATTCAGAAGAAAGGTTTACTTTCTAATCGCGGTTCAAGACAAGAAAAT
    TATCAAGTGTTAAGACAAACAAAAGTTCCTGCTGTTTTATTAGAATTAGGTTATATTAGT
    AACCCAACTGATGAAACGATGATTAAAGATCAATTACATAGACAAATTTTAGAACAAGCA
    ATTGTTGATGGACTTAAAATTTATTTTTCTGCGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    876

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS08220 [old locus tag: SA1458 ]
  • symbol: SA_RS08220
  • description: cell wall amidase
  • length: 291
  • theoretical pI: 8.61491
  • theoretical MW: 32693.9
  • GRAVY: -0.505842

⊟Function[edit | edit source]

  • reaction:
    EC 3.5.1.-?  ExPASy
  • ⊞TIGRFAM:
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan N-acetylmuramoyl-L-alanine amidase CwlD (TIGR02883; EC 3.5.1.28; HMM-score: 115.1)
    Cellular processes Cellular processes Sporulation and germination N-acetylmuramoyl-L-alanine amidase CwlD (TIGR02883; EC 3.5.1.28; HMM-score: 115.1)
    and 1 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking preprotein translocase, SecE subunit (TIGR00964; HMM-score: 14.7)
  • TheSEED: see SA1458
  • ⊞PFAM:
    ZnExoPePases (CL0865) Amidase_3; N-acetylmuramoyl-L-alanine amidase (PF01520; HMM-score: 156.1)
    and 5 more
    SH3 (CL0010) SH3_3; Bacterial SH3 domain (PF08239; HMM-score: 35)
    SH3_4; Bacterial SH3 domain (PF06347; HMM-score: 18.3)
    OST_core (CL0801) STT3-PglB_core; STT3/PglB/AglB core domain (PF21436; HMM-score: 14.9)
    no clan defined DUF4969; Domain of unknown function (DUF4969) (PF16339; HMM-score: 13.1)
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 6.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 8.28
    • Cellwall Score: 1.71
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9199
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0798
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.408033
    • TAT(Tat/SPI): 0.00118
    • LIPO(Sec/SPII): 0.083029
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKIEAWLSKKGLKNKRTLIVVIAFVLFIIFLFLLLNSNSEDSGNITITENAELRTGPNAAYPVIYKVEKGDHFKKIGKVGKWIEVEDTSSNEKGWIAGWHTNLDIVADNTKEKNPLQGKTIVLDPGHGGSDQGASSNTKYKSLEKDYTLKTAKELQRTLEKEGATVKMTRTDDTYVSLENRDIKGDAYLSIHNDALESSNANGMTVYWYHDNQRALADTLDATIQKKGLLSNRGSRQENYQVLRQTKVPAVLLELGYISNPTDETMIKDQLHRQILEQAIVDGLKIYFSA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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