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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1978 [new locus tag: NWMN_RS11445 ]
  • pan locus tag?: SAUPAN005344000
  • symbol: NWMN_1978
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1978 [new locus tag: NWMN_RS11445 ]
  • symbol: NWMN_1978
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2195267..2196850
  • length: 1584
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    ATGTCTGAACCTCAAAAATTACATCCGATTTCATATTTTAATGGCATAATCAATGCTATC
    AAACAAAACATAGTCGTCTTTTTTATTTTCATTATCTTTCAATTGAAAGATTTTGATTAT
    ACGAATCCCGAATCATATTTATGGATAGGTATTGTATTTGTATTCTTTTTAATATCATAC
    ATTTCTCAAATTGTCGGAATTATGAACACGCGATATTGGATTGAGGATAATTATTTCATT
    TTAACAACAGGTATTTTTAATAAAAAGCGTAAAGAATTAAATATAAAACGTATTCAGTCC
    GTTGATATGACACAAGGGGTCGTCAATCAAATTATTGGTGGTGTGGATTTACAAATCAAA
    ACACCAAGTGATGGTATTGTCTTAAGTGTTATTTCGAAAAAACAAGGTGAATATCTTGAA
    CGATATATTGATCAATTGCAAACAGAGTTGAAGACAGAAGTGGCGCAAAAGTCTAGTGCT
    GAGAAGAATGACAACTGTAATCATGACATTGAAGGTAATGTGGAAGACATCGCAGAAGGT
    CGCTTAGATGAAGTGCAGAACACTGATAGTATGCTTAATCAGAAAAATAAACGCATTCCT
    ATATATCAGATGAATTTTAAAGAATCACTATTTATGGCAATGACCAGTGGCGCCATTGGT
    GTAACGTTAGCAGCTTTAGTACCGATTTACGGGGCTGTAAGAGAGTTGATCCCATGGTCG
    AAGCTAAATCATGAAATTAGTCAATGGGTTCAAATTGTAAGTATTTCAGTATTAATCATC
    ATTTTACTAGTATTAATAGTGGAATATATTATTGGAACGATTATAACAATGATAAGATTT
    TATGGCTTTTCGGTGATGCTTGAAAATGAGCAACTTAAAATTGAATATGGTCTCTTTAAC
    AAGAAGAAAGTAACTGTACCAACGAAACGATTGCAAGCTGTTGTTGAACGTCAGTCATAT
    ATACGAAGATTATTTGGCTACACAGCAATACATTTTATCATCACAAGTGATTTTGAAAAT
    AAAAAAATCGAAGATGATGACAATGATTCAGGTAGTGTGCCGATATTGCCGTTTATTAAA
    CGAGACAAAGCATATCAAATTATCCAGAATTTAGTACCAGATTTATCTTATCAACAAGTT
    AATGAAGGTATGCCTTTGTCAGGTTTCCACAGACACTTTTTAATACCTAGTATTATTGTC
    ATAGCTATGGCAGGTATAGGCTGTTATTTTTGGAATCAATTATTATTGTTATTTACGATT
    ATAACAATAGTCATTATTGGTTTATTTGTGATCAAAGGATATCTTTATGTCAAACATGCG
    GGTTTTAAAATGACAGAAGAACAAATTACTATCCAGAATTTCGAGCTATTGAAACGAAAT
    ATTTATTATTTTAAAGCGCATCACATTATAGGATTTGACACTTGGCAACATACATTACTT
    AAACGCAACAATTTAAATAATTTTAGCTTTATTGTTGCTAAAGGTGTGGGAGCCCAATCG
    ATTAACTTAAAATACGCAAGAAGTGAAGATGCAAATAAATTGAAATCATGGTATTTAAGA
    GGTGAAAATGATGAGGGATTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1584

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1978 [new locus tag: NWMN_RS11445 ]
  • symbol: NWMN_1978
  • description: hypothetical protein
  • length: 527
  • theoretical pI: 8.46936
  • theoretical MW: 60803.3
  • GRAVY: 0.071537

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein, ydbT homolog
    Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles CPO analysis  Hypothetical protein, ydbT homolog
  • ⊞PFAM:
    PH (CL0266) bPH_2; Bacterial PH domain (PF03703; HMM-score: 100.3)
    and 2 more
    bPH_4; Bacterial PH domain (PF06713; HMM-score: 15.7)
    no clan defined Phage_pRha; Phage regulatory protein Rha (Phage_pRha) (PF09669; HMM-score: 13.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9998
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0002
  • ⊞LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.000916
    • TAT(Tat/SPI): 0.000076
    • LIPO(Sec/SPII): 0.004484
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSEPQKLHPISYFNGIINAIKQNIVVFFIFIIFQLKDFDYTNPESYLWIGIVFVFFLISYISQIVGIMNTRYWIEDNYFILTTGIFNKKRKELNIKRIQSVDMTQGVVNQIIGGVDLQIKTPSDGIVLSVISKKQGEYLERYIDQLQTELKTEVAQKSSAEKNDNCNHDIEGNVEDIAEGRLDEVQNTDSMLNQKNKRIPIYQMNFKESLFMAMTSGAIGVTLAALVPIYGAVRELIPWSKLNHEISQWVQIVSISVLIIILLVLIVEYIIGTIITMIRFYGFSVMLENEQLKIEYGLFNKKKVTVPTKRLQAVVERQSYIRRLFGYTAIHFIITSDFENKKIEDDDNDSGSVPILPFIKRDKAYQIIQNLVPDLSYQQVNEGMPLSGFHRHFLIPSIIVIAMAGIGCYFWNQLLLLFTIITIVIIGLFVIKGYLYVKHAGFKMTEEQITIQNFELLKRNIYYFKAHHIIGFDTWQHTLLKRNNLNNFSFIVAKGVGAQSINLKYARSEDANKLKSWYLRGENDEGL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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