From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0358 [new locus tag: SACOL_RS01800 ]
  • pan locus tag?: SAUPAN001475000
  • symbol: SACOL0358
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0358 [new locus tag: SACOL_RS01800 ]
  • symbol: SACOL0358
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 371565..371771
  • length: 207
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    GTGACGCAATACTTAGTCACAACATTCAAAGATTCAACAGGACTACCACATGAACATATT
    ACTGTGGCTAGAGATAATCAGACGTTTACAGTTGTTGAGGCAGAGAATAAAGAAGAAGCA
    AAAGAGAAGTATGAGGCACAAGTTAAAAGGGATGCAATTATTAAAGCGAGTCAGTTGTTT
    GAAAATATAAGGGAGTGTGGGAAATGA
    60
    120
    180
    207

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0358 [new locus tag: SACOL_RS01800 ]
  • symbol: SACOL0358
  • description: hypothetical protein
  • length: 68
  • theoretical pI: 5.6988
  • theoretical MW: 7829.74
  • GRAVY: -0.752941

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein, SAV0877 homolog [SA bacteriophages 11, Mu50B]
  • ⊞PFAM:
    no clan defined DUF1381; Protein of unknown function (DUF1381) (PF07129; HMM-score: 108.2)
    and 1 more
    YhzD; YhzD-like protein (PF14120; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.944
    • Cytoplasmic Membrane Score: 0.0013
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.0543
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008112
    • TAT(Tat/SPI): 0.000407
    • LIPO(Sec/SPII): 0.002225
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTQYLVTTFKDSTGLPHEHITVARDNQTFTVVEAENKEEAKEKYEAQVKRDAIIKASQLFENIRECGK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL0358&oldid=97090"