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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0310 [new locus tag: SA_RS01785 ]
  • pan locus tag?: SAUPAN001851000
  • symbol: SA0310
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0310 [new locus tag: SA_RS01785 ]
  • symbol: SA0310
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 367775..368602
  • length: 828
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    GTGACTGAAATTAAATATAAAGTAATTACTAAAGATGCATTTGCATTACCTTACACAATT
    ATTAAAGCAAAAAATCAACCAACAAAAGGCGTTATTGTCTACATCCACGGTGGTGGATTA
    ATGTTCGGTAAAGCTAACGATTTATCCCCACAGTATATCGATATCCTTACGGAACATTAC
    GATTTAATTCAACTAAGTTATCGTTTATTACCAGAAGTAAGTCTCGATTGCATTATTGAG
    GATGTCTACGCATCATTCGATGCGATTCAATCACAATATTCTAATTGCCCTATTTTTACC
    TTTGGCAGATCATCAGGTGCATATTTAAGTCTATTAATTGCACGAGACAGAGATATTGAT
    GGTGTTATTGATTTTTATGGTTATAGTCGCATCAACACTGAACCTTTTAAAACAACTAAT
    AGTTATTACGCAAAAATAGCTCAAAGCATAAACGAAACAATGATTGCACAACTCACTTCA
    CCAACACCGGTTGTTCAAGATCAAATCGCACAACGTTTTTTAATCTACGTTTATGCACGT
    GGCACAGGTAAATGGATAAATATGATTAACATTGCTGATTATACTGATTCAAAATATAAT
    ATTGCACCAGATGAACTTAAAACACTTCCACCTGTTTTCATTGCGCATTGTAATGGCGAT
    TATGATGTTCCCGTTGAGGAAAGCGAACATATCATGAATCATGTTCCACATTCAACATTT
    GAACGCGTGAATAAAAACGAGCATGATTTTGATCGTAGACCTAATGACGAAGCAATCACT
    ATTTATCGTAAAGTTGTTGATTTCTTAAACGCTATAACAATGGTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    828

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0310 [new locus tag: SA_RS01785 ]
  • symbol: SA0310
  • description: hypothetical protein
  • length: 275
  • theoretical pI: 5.13322
  • theoretical MW: 31381.5
  • GRAVY: -0.184727

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108623: hypothetical protein
  • ⊞PFAM:
    AB_hydrolase (CL0028) BD-FAE; BD-FAE (PF20434; HMM-score: 47.5)
    Abhydrolase_3; alpha/beta hydrolase fold (PF07859; HMM-score: 38.2)
    and 4 more
    Hydrolase_4; Serine aminopeptidase, S33 (PF12146; HMM-score: 22.2)
    COesterase; Carboxylesterase family (PF00135; HMM-score: 17.4)
    Peptidase_S9; Prolyl oligopeptidase family (PF00326; HMM-score: 13)
    Abhydro_lipase; Partial alpha/beta-hydrolase lipase region (PF04083; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8346
    • Cytoplasmic Membrane Score: 0.0165
    • Cell wall & surface Score: 0.0039
    • Extracellular Score: 0.145
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006919
    • TAT(Tat/SPI): 0.000286
    • LIPO(Sec/SPII): 0.001227
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTEIKYKVITKDAFALPYTIIKAKNQPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYRLLPEVSLDCIIEDVYASFDAIQSQYSNCPIFTFGRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLPPVFIAHCNGDYDVPVEESEHIMNHVPHSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITMV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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