⊟Summary[edit | edit source]

PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
locus tag: SA1320 [new locus tag: SA_RS07490 ]
pan locus tag^?: SAUPAN003962000
symbol: SA1320
pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA1320 [new locus tag: SA_RS07490 ]
• symbol: SA1320
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 1527514..1529676
• length: 2163
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1124160 NCBI
• RefSeq: NP_374603 NCBI
• BioCyc: see SA_RS07490
• MicrobesOnline: 103629 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  961
  1021
  1081
  1141
  1201
  1261
  1321
  1381
  1441
  1501
  1561
  1621
  1681
  1741
  1801
  1861
  1921
  1981
  2041
  2101
  2161
  
  ATGAATAAAATTAATGATAGAGACTTAACAGAATTGAGTAGTTACTGGGTTTATCAAGAC
  ATCAATAAAGATAATGATTTTACAGTTAACGGAAAAAGATTTAAGCAGGTTGATGAATAT
  AATGATAATGGAAATAAAAATAAAAAAGGTGCCTCAGATTTAAAAATTTATGAATTGTTG
  GATGAAAAAGGAAAACCAACTGGTGAACAAACCATGATTTATCAAGGAACATCTAATGAG
  GCAATAAACCCTAATAATCCATTAAAATCTTTAGATATCGGAGATGATTGGTTACAAAAT
  GCGAAATTAATGGATAATAGTAATAAGTCAACGGATTATCTTAAGCAATCAGACGAATTT
  GCAGATTTATATAGAGACAAACTAAATGACGCTAATAAATTAAGTAAGTATAACTTTACA
  CAAAAATATGGTGTTAGTCCAAATAATTACAAAAACAAAACCATTGTGGCGGATGGCGGT
  AATTCGGAAGGCGGTGCAGGAGCAAAATATCAAGGAGCGAAACATCCAAATGAAAAAGTT
  GTTGCTACTGACCCAGCAATGGTACCTTATGCTGCTTGGCAGAAATTTGCTAGACCACGC
  TTTGATAATATGATTAGTTTTAATAGTACCAACGATTTATTAACATGGTTACAAGATCCA
  TTCATCAAAGATATGCCAGGAAAACGCGTTAACATTAGTGATGGTGTGCCCAGGTTAGAT
  GCTTTAATAGACAGCCATGTAGGTTATAAAAGGAAGTTAAATAGAAAAGACAACACATAC
  GATACTGTACCACTAATCAAAATTAAGTCGGTAAAAGATACAGAAATTAAAAATGGAAAA
  AAAGTAAAAAAGACTATTAACATAACATTAGATATGGATGGGCGAATTCCGATAAATGTT
  TGGACAGGGGATTCGATTGCACGTTCTGGAAGAGGAACTTTAATTAAACTTAATTTAGAA
  AATCTTGATGCGTTGAGTAAACTGATTACTGGTGAAACTAGTGGTATGTTAGCAGAATGC
  GTAATCTTTTTAAATGAAAGTTTTAACATCTCAGAAAATGAAAATAAAAATTTTGCAGAT
  AGAAAGCAACAATTATCAGAAGGATTTAAGGATAAGATTAACTTATTTCAATTAGAAGAA
  ATGGAAAGAACTTTAATTAGTAAAATAAACTCACTTGAAGAAGTTGCAGATGAAACAATA
  GAAAGTATTAGTGCTGTTAAACACTTATTACCTGATTTTGCATTGGATGCATTAAAAGAA
  AGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATA
  GATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCT
  GAAGAAATGATGAAACATTTGAAAGTAGTGAAACAGAATATAGAGCGAATAAAAAATCAA
  AATGATATTTATGGTAGGCAAATTGCAGAAATTAGAAGTATTATGAAACAACAAGATGCA
  ACAATTTTAGATGGGAATTTCCAAATTAATTGTAGCGGCGAAAATATGGTACAGGGTCTA
  GTTATACCTTCTAATTATTTAGGAAGAAAAATGAAAATATTAAAAGACCATATCGATGAT
  GGTATTAAAAAAATAGCAGACTATGTTCAAAGTATATATGATGAATATGCATCGAAAATT
  GTTGATGTAATAAAATATTTGATTAATACAATTCCCAAAATACGTAAGAATTTAAGACAT
  GCAATTGAAATGTTAAATGTAAAAAAGAAAGAATTTTTGTCCCTGATTCCTAATGTAACT
  TGTAATTATATTAAAACTAAATTAGAAGAATTAGATAATACTTTAGGCAAATGGGAGCCA
  TTTCTTAATGATTTAAAAGCAGTGTCACCAATTTTAGATAACCATTTAGATGATATTGTT
  AAGAACATGAAGCCTTTGATTGTACAGATGTTATTTGAACCATCACATTATGATGATATG
  TTTATTTTAAACACACAAGCTCATGCACGTCTTGATCAAATGGCACAACAGTTTGAAGTT
  GTTTGTAATGGCTTGAACGAAAATGAAGGACAAGCAATTCAAACGATGGATCAATCTGCC
  TCTCTAATACGGTCAAACTTAATTCAAGTTAAAGAACAATTAGAAAAACTAGCTGTATAC
  TAA
  60
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  360
  420
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  720
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  1020
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  1140
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  1260
  1320
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  1500
  1560
  1620
  1680
  1740
  1800
  1860
  1920
  1980
  2040
  2100
  2160
  2163
  

⊟Protein

⊟General

• locus tag: SA1320 [new locus tag: SA_RS07490 ]
• symbol: SA1320
• description: hypothetical protein
• length: 720
• theoretical pI: 5.94666
• theoretical MW: 82293.1
• GRAVY: -0.582639

⊟Function

• ⊞⊞TIGRFAM:
  Cellular processes Cellular processes Detoxification formyl-CoA transferase (TIGR03253; EC 2.8.3.16; HMM-score: 14.2)
  and 1 more
  Cellular processes Cellular processes Sporulation and germination sporulation integral membrane protein YtvI (TIGR02872; HMM-score: 8.3)
• TheSEED  :
  • Phage protein
• ⊞⊞PFAM:
  no clan defined Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 22.1)
  DUF7217; Domain of unknown function (DUF7217) (PF23854; HMM-score: 17.7)
  and 4 more
  P-loop_NTPase (CL0023) Guanylate_kin; Guanylate kinase (PF00625; HMM-score: 13.4)
  no clan defined DUF4709; Domain of unknown function (DUF4709) (PF15821; HMM-score: 9)
  Mt_ATP-synt_D; ATP synthase D chain, mitochondrial (ATP5H) (PF05873; HMM-score: 7.7)
  Lipoprotein_7; Adhesin lipoprotein (PF01540; HMM-score: 7.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞⊞PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• ⊞⊞DeepLocPro: Extracellular
  • Cytoplasmic Score: 0.0003
  • Cytoplasmic Membrane Score: 0.0002
  • Cell wall & surface Score: 0.0005
  • Extracellular Score: 0.999
• ⊞⊞LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• ⊞⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.019618
  • TAT(Tat/SPI): 0.001516
  • LIPO(Sec/SPII): 0.005105
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15927070 NCBI
• RefSeq: NP_374603 NCBI
• UniProt: A0A0H3JU80 UniProt

⊟Protein sequence

• MNKINDRDLTELSSYWVYQDINKDNDFTVNGKRFKQVDEYNDNGNKNKKGASDLKIYELLDEKGKPTGEQTMIYQGTSNEAINPNNPLKSLDIGDDWLQNAKLMDNSNKSTDYLKQSDEFADLYRDKLNDANKLSKYNFTQKYGVSPNNYKNKTIVADGGNSEGGAGAKYQGAKHPNEKVVATDPAMVPYAAWQKFARPRFDNMISFNSTNDLLTWLQDPFIKDMPGKRVNISDGVPRLDALIDSHVGYKRKLNRKDNTYDTVPLIKIKSVKDTEIKNGKKVKKTINITLDMDGRIPINVWTGDSIARSGRGTLIKLNLENLDALSKLITGETSGMLAECVIFLNESFNISENENKNFADRKQQLSEGFKDKINLFQLEEMERTLISKINSLEEVADETIESISAVKHLLPDFALDALKERINELFKGIKSFIEKVYDSIDNEILEIFKNIDHDFRDGVSEEMMKHLKVVKQNIERIKNQNDIYGRQIAEIRSIMKQQDATILDGNFQINCSGENMVQGLVIPSNYLGRKMKILKDHIDDGIKKIADYVQSIYDEYASKIVDVIKYLINTIPKIRKNLRHAIEMLNVKKKEFLSLIPNVTCNYIKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMLFEPSHYDDMFILNTQAHARLDQMAQQFEVVCNGLNENEGQAIQTMDQSASLIRSNLIQVKEQLEKLAVY

⊟Experimental data

• experimentally validated: data available for COL
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: SA1320 < SA1321

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications