PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_1397 [new locus tag: NWMN_RS07890 ]
• pan locus tag^?: SAUPAN003962000
• symbol: NWMN_1397
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_1397 [new locus tag: NWMN_RS07890 ]
• symbol: NWMN_1397
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 1565203..1567365
• length: 2163
• essential: unknown other strains

⊟Accession numbers

• Gene ID: 5330828 NCBI
• RefSeq: YP_001332431 NCBI
• BioCyc:
• MicrobesOnline: 3706949 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  121
  181
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  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  961
  1021
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  1141
  1201
  1261
  1321
  1381
  1441
  1501
  1561
  1621
  1681
  1741
  1801
  1861
  1921
  1981
  2041
  2101
  2161
  
  ATGAATAAAATTAATGATAGGGATTTAACAGAATTAAGTAGTTACTGGGTTTATCAAAAT
  ATTGATATAAAAAAAGAATTTAAAGTTAATGGAAAAAGGTTTAAACAAGTAGACAGTTAT
  AATGATGATAAGAATAGTAATTTGAATGGTGCTGCTGATATTAAAATATATGAGTTATTA
  GATGATAAAAGTAAACCAACTGGTCAACAGACAATAATTTATCAAGGAACATCTAATGAG
  GCAATTAATCCAAATAATCCATTAAAATCATCGGGGTTTGGAGATGATTGGCTCCAAAAT
  GCTAAATTAATGAATAATGATAATGAAAGCACAGATTATTTAAAGCAAACAGATCAATTA
  TCAAATCAATATAAAATAAAGTTAGAAGATGCAGATAGATTATCAAATAGTGATTTTTTA
  AAAAAATATAGAATGGAATCAAGTAACTTCAAAAACAAAACCATTGTGGCGGATGGCGGT
  AATTCGGAAGGCGGTGCAGGAGCAAAATATCAAGGAGCGAAACATCCGAATGAAAAAGTT
  GTTGCTACTGACTCAGCAATGATTCCTTATGCTGCTTGGCAGAAATTTGCTAGACCACGC
  TTTGATAATATGATTAGTTTTAATAGTACCAACGATTTATTAACATGGTTACAAGATCCA
  TTCATCAAAGATATGCCAGGAAAACGCGTTAACATTAATGATGGTGTGCCCAGGTTAGAT
  ACTTTAATAGACAGCCATGTAGGTTATAAAAGGAAGTTAAATAGAAAAGATAACACATAC
  GATACTGTACCACTAATCAAAATAAAGTCGGTAAAAGATACAGAAATTAAAAATGGAAAA
  AAAGTAAAAAAGACTATTAACATAACATTAGATATGGATGGGCGAATTCCAATAAATGTT
  TGGACAGGAGATTCGATTGCACGTTCTGGAAGAGGAACTTTAATTAAACTTAATTTAGAA
  AATCTTGATGCGTTGAGTAAACTGATTACTGGTGAAACAAGTGGTATGTTAGCAGAATGC
  GTAATCTTTTTAAATGAAAGTTTTAACATCTCAGAAAATGAAAATAAAAATTTTGCAGAT
  AGAAAGAAACAATTATCAGAAGGATTTAAGGATAAGATTAACTTATTTCAGTTAGAAGAA
  ATGGAAAGAACTTTAATTAGTAAAATAAACTCACTTGAAGAAGTTGCAGATGAAACAATA
  GAAAGTATTAGTGCTGTTAAACACTTATTACCTGATTTTGCATTGGATGCATTAAAAGAA
  AGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATA
  GATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCT
  GAAGAAATGATGAAACATTTGAAAGTAGTGAAACAGAATATAGACCAAATAAAAAATCAA
  AATGATATTTATGGTAGGCAAATTGCAGATATTAGAAGTATTATGAAACAACAAGATGCA
  ACAATTTTAGATGGAAATTTTCAAATTAATTGTAGCGGCGAAAATATGGTACAGGGTCTA
  GTTATACCTTCTAATTATTTAGGAAGAAAAATGAAAATATTAAAAGACCATATCGATGAT
  GGTATTAAAAAAATAGCAGACTATGTTCAAGGTATATATGATGAATATGCATCGAAAATT
  GTCGATGTAATAAAATATTTGATTAATACAATTCCCAAAATACGTAAGAATTTAAGACAT
  GCAATTGAAATGTTAAATGTAAAAAAGAAAGAATTTTTGTCCCTGATTCCTAATGTAACT
  TGTAATTATATTAAAACTAAATTAGAAGAATTAGATAATACTTTAGGCAAATGGGAGCCT
  TTTCTTAATGATTTAAAAGCAGTGTCACCAATTTTAGATAACCATTTAGATGATATTGTT
  AAGAACATGAAGCCTTTGATTGTACAAATGATATTTGAACCATCACATTATGACGATATG
  TTTATTTTAAACACACAAGCTCATGCGCGTCTTGATCAAATGGCACAACAGTTTGAAGTT
  GTTTGTAATGGCTTGAACGAAAATGAAGGACAAGCAATTCAAACGATGGATCAATCTGCC
  TCTCTAATACGGTCAAACTTAATTCAAGTTAAAGAACAATTAGAAAAACTAGCTGTATAC
  TAA
  60
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  1560
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  1740
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  2160
  2163
  

⊟Protein

⊟General

• locus tag: NWMN_1397 [new locus tag: NWMN_RS07890 ]
• symbol: NWMN_1397
• description: hypothetical protein
• length: 720
• theoretical pI: 6.09449
• theoretical MW: 82306.2
• GRAVY: -0.561667

⊟Function

• TIGRFAM:
  Cellular processes Cellular processes Detoxification formyl-CoA transferase (TIGR03253; EC 2.8.3.16; HMM-score: 16.6)
  and 1 more
  Cellular processes Cellular processes Sporulation and germination sporulation integral membrane protein YtvI (TIGR02872; HMM-score: 7.9)
• TheSEED  :
  • hypothetical protein within a prophage
• PFAM:
  no clan defined Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 20.5)
  DUF7217; Domain of unknown function (DUF7217) (PF23854; HMM-score: 16.5)
  and 2 more
  DUF4709; Domain of unknown function (DUF4709) (PF15821; HMM-score: 9.5)
  Lipoprotein_7; Adhesin lipoprotein (PF01540; HMM-score: 8.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• DeepLocPro: Extracellular
  • Cytoplasmic Score: 0.0003
  • Cytoplasmic Membrane Score: 0.0003
  • Cell wall & surface Score: 0.0005
  • Extracellular Score: 0.9989
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.019107
  • TAT(Tat/SPI): 0.001276
  • LIPO(Sec/SPII): 0.003102
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 151221609 NCBI
• RefSeq: YP_001332431 NCBI
• UniProt: A0A0H3K8P6 UniProt

⊟Protein sequence

• MNKINDRDLTELSSYWVYQNIDIKKEFKVNGKRFKQVDSYNDDKNSNLNGAADIKIYELLDDKSKPTGQQTIIYQGTSNEAINPNNPLKSSGFGDDWLQNAKLMNNDNESTDYLKQTDQLSNQYKIKLEDADRLSNSDFLKKYRMESSNFKNKTIVADGGNSEGGAGAKYQGAKHPNEKVVATDSAMIPYAAWQKFARPRFDNMISFNSTNDLLTWLQDPFIKDMPGKRVNINDGVPRLDTLIDSHVGYKRKLNRKDNTYDTVPLIKIKSVKDTEIKNGKKVKKTINITLDMDGRIPINVWTGDSIARSGRGTLIKLNLENLDALSKLITGETSGMLAECVIFLNESFNISENENKNFADRKKQLSEGFKDKINLFQLEEMERTLISKINSLEEVADETIESISAVKHLLPDFALDALKERINELFKGIKSFIEKVYDSIDNEILEIFKNIDHDFRDGVSEEMMKHLKVVKQNIDQIKNQNDIYGRQIADIRSIMKQQDATILDGNFQINCSGENMVQGLVIPSNYLGRKMKILKDHIDDGIKKIADYVQGIYDEYASKIVDVIKYLINTIPKIRKNLRHAIEMLNVKKKEFLSLIPNVTCNYIKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMIFEPSHYDDMFILNTQAHARLDQMAQQFEVVCNGLNENEGQAIQTMDQSASLIRSNLIQVKEQLEKLAVY

⊟Experimental data

• experimentally validated: data available for COL
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: NWMN_1397 < NWMN_1398

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications