PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Views

More

• Read
• Edit
• History
• Edit source

⊟Summary

• organism: Staphylococcus aureus COL
locus tag: SACOL_RS05780 [old locus tag: SACOL1132 ]
pan locus tag^?: SAUPAN003350000
symbol: SACOL_RS05780
pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SACOL_RS05780 [old locus tag: SACOL1132 ]
• symbol: SACOL_RS05780
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 1142112..1142501
• length: 390
• essential: unknown other strains

⊟Accession numbers

• Location: NC_002951 (1142112..1142501) NCBI
• BioCyc: SACOL_RS05780 BioCyc
• MicrobesOnline: see SACOL1132

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  
  ATGAAACAAACATTTATTACACTTGGTGAAGGTCTAACAGATTTGTTCGAATTCATGACG
  ATGATTGAATATAACCATCAACGTATTGATAAAATTATCTATTTTCATTCACCACAAGCT
  GAAAATAAAAAGTCATCTGTAGCAATCATTATGAACCCTACAACTGGCAATCATTTCCAA
  GCATTTTATATCATGATAAACGCTATTAAATATCCATATCCAGATTCAAATAAAAAGTTT
  CAAATGATAAATGATTGTGCTGAAAAATTCGACATACCAATTTTAGGTATCGATGTACAG
  CCCCCTCAAGCATTTCATGATTTATCGTTATATTATAATTATTTAATTAGTGTGTTAAGG
  CTCCAAAAATGGATACCAGAACTTCAATAA
  60
  120
  180
  240
  300
  360
  390
  

⊟Protein

⊟General

• locus tag: SACOL_RS05780 [old locus tag: SACOL1132 ]
• symbol: SACOL_RS05780
• description: hypothetical protein
• length: 129
• theoretical pI: 6.50912
• theoretical MW: 15185.5
• GRAVY: -0.186822

⊟Function

• TIGRFAM:
  Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Glutathione and analogs glutamate--cysteine ligase (TIGR01436; EC 6.3.2.2; HMM-score: 10.9)
• TheSEED: see SACOL1132
• ⊞PFAM:
  no clan defined DUF7147; Domain of unknown function (DUF7147) (PF23648; HMM-score: 149.9)
  and 1 more
  DUF6208; Family of unknown function (DUF6208) (PF19713; HMM-score: 13.4)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• ⊞DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.6153
  • Cytoplasmic Membrane Score: 0.2685
  • Cell wall & surface Score: 0.0001
  • Extracellular Score: 0.1161
• LocateP:
• ⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.005074
  • TAT(Tat/SPI): 0.000174
  • LIPO(Sec/SPII): 0.000605
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446737309 NCBI
• RefSeq: WP_000814565 NCBI
• UniProt: see SACOL1132

⊟Protein sequence

• MKQTFITLGEGLTDLFEFMTMIEYNHQRIDKIIYFHSPQAENKKSSVAIIMNPTTGNHFQAFYIMINAIKYPYPDSNKKFQMINDCAEKFDIPILGIDVQPPQAFHDLSLYYNYLISVLRLQKWIPELQ

⊟Experimental data

• experimentally validated: data available for NCTC8325
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications