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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS02100 [old locus tag: SACOL0417 ]
  • pan locus tag?: SAUPAN001888000
  • symbol: SACOL_RS02100
  • pan gene symbol?: tatC
  • synonym:
  • product: twin-arginine translocase subunit TatC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS02100 [old locus tag: SACOL0417 ]
  • symbol: SACOL_RS02100
  • product: twin-arginine translocase subunit TatC
  • replicon: chromosome
  • strand: -
  • coordinates: 423810..424511
  • length: 702
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (423810..424511) NCBI
  • BioCyc: SACOL_RS02100 BioCyc
  • MicrobesOnline: see SACOL0417

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    CTGGTTCACTTTAGCGAACTACGCCATCGGTTAGTAAAAATTTTATTGTCGTTCGTCATT
    ACGGTCATCGTCGTATATGTTTCATCATTTTGGTGGATGACACCATTCATAACGTATATT
    ACCCGTGCACATGTGTCCTTACATGCATTTTCATTCACAGAAATGATACAAATATACGTG
    ATGATTATATTTTTCATCGCGTTTTGTTTCATTTCACCAGTCATGTTTTATCAATTGTGG
    GCATTCATTGCACCTGGATTACATAATAATGAACGTCAATTTATTTATAAATATAGTTTT
    TTCAGCGTGTTATTATTCTGTGCTGGCGTCGCTTTTGCATTTTATGTTGGCTTTCCAATG
    ATCATTCAATTCGCGTTAAAATTATCATTAACTTTAAACATTTCGCCTGTCATTGGCTTT
    AAAGCATATTTGATTGAACTCATACGTTGGTTATTCACATTTGGTCTTCTATTTCAATTA
    CCAATATTATTTATGGGTCTTGCAAAATTCGGTCTTATAGATACCACATCATTGAAACAT
    TATCGTAAATATATTTATTTCGCTTGCTTTGTATTAGCAAGTATCATTGCACCACCCGAT
    TTAACATTAAATATATTACTCACATTGCCACTCATATTGCTCTTTGAGTTCAGTATGTTC
    ATCGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    702

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS02100 [old locus tag: SACOL0417 ]
  • symbol: SACOL_RS02100
  • description: twin-arginine translocase subunit TatC
  • length: 233
  • theoretical pI: 9.76795
  • theoretical MW: 27224.8
  • GRAVY: 1.05708

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing Protein fate Protein and peptide secretion and trafficking twin arginine-targeting protein translocase TatC (TIGR00945; HMM-score: 160.9)
    and 1 more
    Sec-independent protein translocase TatC (TIGR01912; HMM-score: 124.2)
  • TheSEED: see SACOL0417
  • PFAM:
    no clan defined TatC; Sec-independent protein translocase protein (TatC) (PF00902; HMM-score: 163.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9993
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0006
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002134
    • TAT(Tat/SPI): 0.000279
    • LIPO(Sec/SPII): 0.023877
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MVHFSELRHRLVKILLSFVITVIVVYVSSFWWMTPFITYITRAHVSLHAFSFTEMIQIYVMIIFFIAFCFISPVMFYQLWAFIAPGLHNNERQFIYKYSFFSVLLFCAGVAFAFYVGFPMIIQFALKLSLTLNISPVIGFKAYLIELIRWLFTFGLLFQLPILFMGLAKFGLIDTTSLKHYRKYIYFACFVLASIIAPPDLTLNILLTLPLILLFEFSMFIVKFTCRGKPPTH

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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