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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1330 [new locus tag: SA_RS07540 ]
  • pan locus tag?: SAUPAN004032000
  • symbol: SA1330
  • pan gene symbol?: nudF
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1330 [new locus tag: SA_RS07540 ]
  • symbol: SA1330
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1537591..1538133
  • length: 543
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGGATTTAAATGAAAAAACAATTGATCGAACAGTTATTTATAATGGCAAAATTGTAGAT
    GTAGAAATTCATACAGTGACATTACCAAACGGTGAAACGTCAACAAGAGAATTAGTTTAT
    CATAATGGTGCAGTTGCTGTTTGTGCATTGACACCTAAAAAAGAAGTCGTATTAGTGAAA
    CAGTATCGTAAACCAGTAGAAAAACCATTGCTAGAAATTCCAGCTGGTAAATTAGAAGAT
    GATGAAAATAGAGTCGAAGCGGCTAAGCGTGAATTAGAAGAAGAAACAGGATATATTGCC
    AAAGAGTTAACACATGTTGTAGATATGTATGGTTCACCAGGTTTTTGCGATGAACAATTA
    TCAATTTATTTTACTGATAATTTAGAAGAAGGTACAGTTCACTTAGATGAAGATGAATTT
    GTCGAAGTCATTAAAGTTCCGATTGAGAATGTTAAATCGATGCTAATGAATAAAGAAATA
    GAAGATGCGAAGACTATCATTGCATTGCAACACCTATTATTAAATTATAATCATTCTAAA
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    543

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1330 [new locus tag: SA_RS07540 ]
  • symbol: SA1330
  • description: hypothetical protein
  • length: 180
  • theoretical pI: 4.50599
  • theoretical MW: 20452.2
  • GRAVY: -0.359444

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Unknown function Enzymes of unknown specificity nudix-type nucleoside diphosphatase, YffH/AdpP family (TIGR00052; EC 3.6.1.-; HMM-score: 70.4)
    and 2 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair nucleoside triphosphatase YtkD (TIGR02705; EC 3.6.1.-; HMM-score: 31.8)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair mutator mutT protein (TIGR00586; EC 3.6.1.-; HMM-score: 21)
  • ⊞TheSEED  :
    • ADP-ribose pyrophosphatase (EC 3.6.1.13)
    Cofactors, Vitamins, Prosthetic Groups, Pigments NAD and NADP NAD and NADP cofactor biosynthesis global  ADP-ribose pyrophosphatase (EC 3.6.1.13)
    and 1 more
    Nucleosides and Nucleotides Detoxification Nudix proteins (nucleoside triphosphate hydrolases)  ADP-ribose pyrophosphatase (EC 3.6.1.13)
  • PFAM:
    NUDIX (CL0261) NUDIX; NUDIX domain (PF00293; HMM-score: 69.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9937
    • Cytoplasmic Membrane Score: 0.0013
    • Cell wall & surface Score: 0.0005
    • Extracellular Score: 0.0046
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00588
    • TAT(Tat/SPI): 0.000656
    • LIPO(Sec/SPII): 0.000778
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MDLNEKTIDRTVIYNGKIVDVEIHTVTLPNGETSTRELVYHNGAVAVCALTPKKEVVLVKQYRKPVEKPLLEIPAGKLEDDENRVEAAKRELEEETGYIAKELTHVVDMYGSPGFCDEQLSIYFTDNLEEGTVHLDEDEFVEVIKVPIENVKSMLMNKEIEDAKTIIALQHLLLNYNHSK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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