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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS04520 [old locus tag: NWMN_0799 ]
  • pan locus tag?: SAUPAN003026000
  • symbol: NWMN_RS04520
  • pan gene symbol?: —
  • synonym:
  • product: DUF86 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS04520 [old locus tag: NWMN_0799 ]
  • symbol: NWMN_RS04520
  • product: DUF86 domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 888280..888714
  • length: 435
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (888280..888714) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0799

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGTATTTTGTAGACAAAGATAAACTAACTCAGAAATTAGCCTATTTACAAGCATTAACT
    GATGATTATCATGAGAGCAAGCACAATCATTATGCATTTGAACGCATTGCTCAAATGTTG
    ATAGAATCATCGGTAGATATAGGGAATATGATTATCGATGCATTTATTTTAAGGGATCCT
    GGTAATTATAAAGATGTGATTGATATATTAGAACTAGAAAATGTTATTACTAAAGAAACA
    CAGCAGGCGATTAATAAAACTGTCGGTATTCGTAAACAATTTACATATGATTACACAGCC
    TTAGATATTAAGATTATCATGCCAATGTTTGATGACGCATTACCTTATTACAAACAATTT
    ATTACAGAAGTAACGACATTTTTACATCAAGAAAATGTACCAGTAACAGCTTTTGGTAAA
    GGAGAAAATCAATAA
    60
    120
    180
    240
    300
    360
    420
    435

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS04520 [old locus tag: NWMN_0799 ]
  • symbol: NWMN_RS04520
  • description: DUF86 domain-containing protein
  • length: 144
  • theoretical pI: 4.64579
  • theoretical MW: 16779
  • GRAVY: -0.2875

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see NWMN_0799
  • PFAM:
    KNTase_C (CL0291) HepT-like; Ribonuclease HepT-like (PF01934; HMM-score: 75.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9894
    • Cytoplasmic Membrane Score: 0.008
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0023
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001402
    • TAT(Tat/SPI): 0.000084
    • LIPO(Sec/SPII): 0.000266
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYFVDKDKLTQKLAYLQALTDDYHESKHNHYAFERIAQMLIESSVDIGNMIIDAFILRDPGNYKDVIDILELENVITKETQQAINKTVGIRKQFTYDYTALDIKIIMPMFDDALPYYKQFITEVTTFLHQENVPVTAFGKGENQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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