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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS03220 [old locus tag: SACOL0623 ]
  • pan locus tag?: SAUPAN002354000
  • symbol: SACOL_RS03220
  • pan gene symbol?: vraC
  • synonym:
  • product: protein VraC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS03220 [old locus tag: SACOL0623 ]
  • symbol: SACOL_RS03220
  • product: protein VraC
  • replicon: chromosome
  • strand: +
  • coordinates: 657238..657603
  • length: 366
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (657238..657603) NCBI
  • BioCyc: SACOL_RS03220 BioCyc
  • MicrobesOnline: see SACOL0623

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGCAGCATTATTTACTCGATTCTAACCAGCGATTAAATGTGTCATTTTCTAAGGATAGT
    GTGGCTGCATATTATCAGTGTTTTAACCAACCTTATAGAAAAGAAGTACCACCATTAATG
    TGTGCGTCATTATGGCCAAAATTTGATTTATTTAAAAAATATGCAAATAGCGAACTGATT
    TTAACAAAATCAGCAATTAATCAAACTCAAAAGATAGAAGTAGACACAATATATGTAGGG
    CATTTAGAAGATATTGAATGCCGACAGACTCGCAATATCACACGTTATACAATGGCTTTA
    ACATTAACTAAAAATGATCAACATGTCATAACGGTTACACAAACTTTTATTAAGGCGATG
    AAGTAG
    60
    120
    180
    240
    300
    360
    366

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS03220 [old locus tag: SACOL0623 ]
  • symbol: SACOL_RS03220
  • description: protein VraC
  • length: 121
  • theoretical pI: 9.10482
  • theoretical MW: 14187.3
  • GRAVY: -0.386777

⊟Function[edit | edit source]

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9513
    • Cytoplasmic Membrane Score: 0.0265
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0221
  • LocateP:
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.022719
    • TAT(Tat/SPI): 0.001038
    • LIPO(Sec/SPII): 0.005794
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQHYLLDSNQRLNVSFSKDSVAAYYQCFNQPYRKEVPPLMCASLWPKFDLFKKYANSELILTKSAINQTQKIEVDTIYVGHLEDIECRQTRNITRYTMALTLTKNDQHVITVTQTFIKAMK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS03220&oldid=90520"
Insert paragraph

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS03220 [old locus tag: SACOL0623 ]
  • pan locus tag?: SAUPAN002354000
  • symbol: SACOL_RS03220
  • pan gene symbol?: vraC
  • synonym:
  • product: protein VraC

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS03220 [old locus tag: SACOL0623 ]
  • symbol: SACOL_RS03220
  • product: protein VraC
  • replicon: chromosome
  • strand: +
  • coordinates: 657238..657603
  • length: 366
  • essential: unknown other strains

Insert paragraph

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (657238..657603) NCBI
  • BioCyc: SACOL_RS03220 BioCyc
  • MicrobesOnline: see SACOL0623

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGCAGCATTATTTACTCGATTCTAACCAGCGATTAAATGTGTCATTTTCTAAGGATAGT
    GTGGCTGCATATTATCAGTGTTTTAACCAACCTTATAGAAAAGAAGTACCACCATTAATG
    TGTGCGTCATTATGGCCAAAATTTGATTTATTTAAAAAATATGCAAATAGCGAACTGATT
    TTAACAAAATCAGCAATTAATCAAACTCAAAAGATAGAAGTAGACACAATATATGTAGGG
    CATTTAGAAGATATTGAATGCCGACAGACTCGCAATATCACACGTTATACAATGGCTTTA
    ACATTAACTAAAAATGATCAACATGTCATAACGGTTACACAAACTTTTATTAAGGCGATG
    AAGTAG
    60
    120
    180
    240
    300
    360
    366

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS03220 [old locus tag: SACOL0623 ]
  • symbol: SACOL_RS03220
  • description: protein VraC
  • length: 121
  • theoretical pI: 9.10482
  • theoretical MW: 14187.3
  • GRAVY: -0.386777

Insert paragraph

⊟Function[edit | edit source]

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9513
    • Cytoplasmic Membrane Score: 0.0265
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0221
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.022719
    • TAT(Tat/SPI): 0.001038
    • LIPO(Sec/SPII): 0.005794
  • predicted transmembrane helices (TMHMM): 0

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MQHYLLDSNQRLNVSFSKDSVAAYYQCFNQPYRKEVPPLMCASLWPKFDLFKKYANSELILTKSAINQTQKIEVDTIYVGHLEDIECRQTRNITRYTMALTLTKNDQHVITVTQTFIKAMK

Insert paragraph

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

Insert paragraph

⊟Transcription pattern[edit | edit source]

Insert paragraph

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Insert paragraph

⊟Protein stability[edit | edit source]

  • half-life: no data available

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph