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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS01205 [old locus tag: SACOL0238 ]
  • pan locus tag?: SAUPAN001126000
  • symbol: SACOL_RS01205
  • pan gene symbol?: tarL'
  • synonym:
  • product: tagB protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS01205 [old locus tag: SACOL0238 ]
  • symbol: SACOL_RS01205
  • product: tagB protein
  • replicon: chromosome
  • strand: +
  • coordinates: 275748..277289
  • length: 1542
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (275748..277289) NCBI
  • BioCyc: SACOL_RS01205 BioCyc
  • MicrobesOnline: see SACOL0238

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGAAAATAGACGGTAATACATTTATATGTAGATTCAACGTCGCAATATTAGACGATGGG
    TATTATTTACCAATGGATAAATATTTATTTGTTTATCATGACCAGTTAGAGTATATTGGA
    CAACTTAATCCAAATATTATTGATCAAGCTTATGCGGCATTAAATGAAGAGCAAATTGAA
    GAATACAATGAGCTGACTACACAAAATGGAAAAGTGAACTATTTATTAGCGTATGATGCT
    AAAGTTTTCCGTAAAGGTGGCGTATCACAACATACGGTCTATACCATTACTCCGGAAATA
    GCAAGTGACGTTAACGAATTTGTATTTGATATTGAAATCACCTTACCTCAAGAGAAATCA
    GGGGTCATTGCGACAAGTGCACACTGGCTTCATAAACAAGGTCATAAAGCTTCATTTGAA
    AGTAGAAGTTTCTTATTTAAAGCTATTTTTAATATTACAAAGTTACTACATATTAAAAGA
    AGCAAAACAATATTATTCACATCAGATTCGCGTCCGAATTTATCAGGGAATTTCAAGTAT
    GTATATGATGAGTTACTACGCCAAAAAGTAGATTTTGATTATGATATTAAAACGGTATTT
    AAGGAGAATATTACGGATAGACGCAAATGGAGAGACAAGTTTAGATTGCCATATTTACTT
    GGTAAGGCCGATTATATTTTTGTTGATGATTTCCATCCATTAATTTATACGGTTCGCTTT
    AGACCATCACAAGAAATTATTCAAGTGTGGCATGCTGTTGGTGCCTTTAAAACAGTTGGC
    TTTAGTCGTACAGGTAAAAAAGGTGGTCCGTTTATCGATTCATTAAACCATCGTAGTTAC
    ACGAAAGCATATGTTTCATCAGAAACCGATATTCCATTTTATGCTGAAGCATTTGGAATT
    AGAGAAGAAAATGTTGTACCAACAGGTGTACCACGTACTGATGTACTATTTGATGAAGCT
    TATGCAACACAAATTAAACAAGAGATGGAAGATGAATTGCCAATTATAAAAGGTAAGAAA
    GTTATTCTATTCGCACCGACATTTAGAGGTAATGGTCACGGTACGGCACATTATCCATTT
    TTTAAAATTGATTTTGAACGTTTAGCAAGATACTGCGAGAAGCATAATGCAGTTGTGTTA
    TTCAAAATGCATCCGTTCGTAAAAAATAGACTTAATATTTCACGTGAACATAGACAATAC
    TTTATCGATGTGTCAGATCATCGTGAAGTTAACGATATTCTCTTTGTTACAGACTTGTTG
    ATTAGTGATTATTCATCTTTAATATATGAATATGCAGTATTTAAAAAGCCGATGATTTTC
    TATGCATTTGACTTAGAAGATTACATTACGACGCGTGATTTCTATGAACCATTTGAATCA
    TTTGTTCCAGGTAAAATTGTACAGTCCTTTGATGCATTAATGGATGCTTTGGACAATGAA
    GATTATGAGGTTGAAAAAGTTGTGCCATTCTTAGATAAACATTTTAAATATCAAGATGGT
    CGCTCAAGTGAACGTTTAGTCAAAGATTTGTTTAGACGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1542

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS01205 [old locus tag: SACOL0238 ]
  • symbol: SACOL_RS01205
  • description: tagB protein
  • length: 513
  • theoretical pI: 6.52023
  • theoretical MW: 60183
  • GRAVY: -0.353411

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL0238
  • ⊞PFAM:
    GT-B (CL0113) Glyphos_transf; CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase (PF04464; HMM-score: 352.3)
    and 1 more
    no clan defined ATV_ORF273; Acidianus two-tailed virus, ORF273 protein (PF20828; HMM-score: 16.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.05
    • Cytoplasmic Membrane Score: 8.78
    • Cellwall Score: 0.08
    • Extracellular Score: 0.09
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0242
    • Cytoplasmic Membrane Score: 0.9593
    • Cell wall & surface Score: 0.0009
    • Extracellular Score: 0.0157
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004518
    • TAT(Tat/SPI): 0.000093
    • LIPO(Sec/SPII): 0.000288
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKIDGNTFICRFNVAILDDGYYLPMDKYLFVYHDQLEYIGQLNPNIIDQAYAALNEEQIEEYNELTTQNGKVNYLLAYDAKVFRKGGVSQHTVYTITPEIASDVNEFVFDIEITLPQEKSGVIATSAHWLHKQGHKASFESRSFLFKAIFNITKLLHIKRSKTILFTSDSRPNLSGNFKYVYDELLRQKVDFDYDIKTVFKENITDRRKWRDKFRLPYLLGKADYIFVDDFHPLIYTVRFRPSQEIIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIREENVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGNGHGTAHYPFFKIDFERLARYCEKHNAVVLFKMHPFVKNRLNISREHRQYFIDVSDHREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPFESFVPGKIVQSFDALMDALDNEDYEVEKVVPFLDKHFKYQDGRSSERLVKDLFRR

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL0238
  • protein localization: see SACOL0238
  • quantitative data / protein copy number per cell: see SACOL0238
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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