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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 03-AUG-2016

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01555
  • pan locus tag?: SAUPAN001471000
  • symbol: SAOUHSC_01555
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_01555
  • symbol: SAOUHSC_01555
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1495425..1495772
  • length: 348
  • essential: no DEG

⊟Accession numbers[edit | edit source]

  • Gene ID: 3920598 NCBI
  • RefSeq: YP_500071 NCBI
  • BioCyc: G1I0R-1444 BioCyc
  • MicrobesOnline: 1289985 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGATGTTGAAATTTAAAGCTTGGGATAAAGATAAAAAAGTTATGAGTATTATTGACGAA
    ATCGATTTTAATAGTGGGTACATTTTGATTTCAACAGGTTATAAAAGTTTCAATGAAGTA
    AAACTATTACAATACACAGGATTTAAAGATGTGCACGGTGTGGAGATTTATGAAGGGGAT
    ATTGTTCAAGATTGTTATTCGAGAGAAGTAAGTTTTATCGAGTTTAAAGAAGGAGCCTTT
    TATATAACTTTTAGCAATGTAACTGAATTACTAAGTGAAAATGACGATATTATTGAAATT
    GTTGGAAATATTTTTGAAAATGAGATGCTATTGGAGGTTATGAGATGA
    60
    120
    180
    240
    300
    348

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_01555
  • symbol: SAOUHSC_01555
  • description: hypothetical protein
  • length: 115
  • theoretical pI: 4.117
  • theoretical MW: 13436.3
  • GRAVY: -0.0478261

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved phage conserved hypothetical protein TIGR01671 (TIGR01671; HMM-score: 42.2)
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage conserved hypothetical protein TIGR01671 (TIGR01671; HMM-score: 42.2)
  • TheSEED  :
    • Phage protein
  • PFAM:
    no clan defined YopX; YopX protein (PF09643; HMM-score: 66.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8349
    • Cytoplasmic Membrane Score: 0.0111
    • Cell wall & surface Score: 0.0011
    • Extracellular Score: 0.1529
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004016
    • TAT(Tat/SPI): 0.000105
    • LIPO(Sec/SPII): 0.000602
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 88195268 NCBI
  • RefSeq: YP_500071 NCBI
  • UniProt: Q2FYA9 UniProt
  • STRING: 93061.SAOUHSC_01555 STRING

⊟Protein sequence[edit | edit source]

  • MMLKFKAWDKDKKVMSIIDEIDFNSGYILISTGYKSFNEVKLLQYTGFKDVHGVEIYEGDIVQDCYSREVSFIEFKEGAFYITFSNVTELLSENDDIIEIVGNIFENEMLLEVMR

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: no polycistronic organisation predicted

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser:  [1] no expression profile plot available

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: no data available

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAOUHSC_01555&oldid=95638"
  • This page was last edited on 11 March 2016, at 10:38.
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