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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS09200 [old locus tag: NWMN_1638 ]
  • pan locus tag?: SAUPAN004412000
  • symbol: NWMN_RS09200
  • pan gene symbol?: —
  • synonym:
  • product: glutamyl aminopeptidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS09200 [old locus tag: NWMN_1638 ]
  • symbol: NWMN_RS09200
  • product: glutamyl aminopeptidase
  • replicon: chromosome
  • strand: -
  • coordinates: 1825762..1826838
  • length: 1077
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1825762..1826838) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1638

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAACATAAATAAAAAAGTAACATTACAACGAATTCAAACTTTAACTGAGCTTCATGGG
    GCACCAGGTTTTGAAGAAGAAGTAAAAAATTATATGACTCAGCAAATGGCGCCGTACGTA
    GATGAATTTATTGAAAATCGTATGGGTGGATTTTTTGGTGTGAAAAAATCTAAAAATCCA
    AATGCAAAACGTGTAATGATTGCAGCACATATGGATGAAATCGGATTTATGATTACAAAT
    ATCACTAAAAATGGAATGATTCAATTCACAAATTTAGGTGGTGTTGCAAATGATATTTGG
    CAAGGACAACGCTTAGTAATTAAAAATAGAAATGGCGATAAAATTATCGGTGTTGTTTCT
    AATATACCTAAACATTTTCGTACTGGTAGTGAAGGTGCACCGGAAATTAAAGATTTAACA
    TTAGATATAGGTGCTCAAAATGAAGATGAGGTGCGTGAGCGCGGAATAGATATAGGAGAT
    ACAATTGTACCTCACACGCCATTCACACAGTTATCTGAACATCGATATAGTGCTAAAGCA
    TGGGATAATCGTTATGGTTGTGTCTTGGCAATTGAAATACTAGAATTATTAAAAGATATA
    GAATTAGATGTAGACTTGTATGTTGGCGCAAATGTTCAAGAAGAGGTTGGATTACGAGGT
    GCGAAAGCATCTGCAGAGATGATAGACCCAGACGTTGCATTTGTAGTTGATTGTTCACCT
    GCCAATGACGTTAAAGGAAACCAACCATTATCTGGTGAACTTGGTAAAGGGACGTTAATT
    CGCATAAAAGACGGTACAATGATTTTAAAGCCTGTATTTAGAGACTATTTATTAAAGTTA
    GTAGAAGCACATGACATTGAACATCAATACTATATGTCACCAGGTGGAACAGATGGTGGA
    GAAATTCATAAAGCTAATATTGGTATTCCGACTGCAGTTATTGGTGTATGTGCACGATAT
    ATTCATAGTACAGACTCAGTATTTGATATAAGAGACTATTTTGCAGCTAGATCTTTACTT
    TCAGAAGCCATTTGTAATTTAGATAATAATCAAATAGAAACATTACAATATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1077

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS09200 [old locus tag: NWMN_1638 ]
  • symbol: NWMN_RS09200
  • description: glutamyl aminopeptidase
  • length: 358
  • theoretical pI: 5.15206
  • theoretical MW: 39783.1
  • GRAVY: -0.267598

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides glutamyl aminopeptidase (TIGR03107; EC 3.4.11.7; HMM-score: 369.3)
    and 1 more
    hydrolase, peptidase M42 family (TIGR03106; HMM-score: 42.2)
  • TheSEED: see NWMN_1638
  • ⊞PFAM:
    ZnExoPePases (CL0865) Peptidase_M42; M42 glutamyl aminopeptidase (PF05343; HMM-score: 330.5)
    and 2 more
    Peptidase_M20; Peptidase family M20/M25/M40 (PF01546; HMM-score: 28.3)
    Peptidase_M28; Peptidase family M28 (PF04389; HMM-score: 22.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: a divalent metal cation
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9855
    • Cytoplasmic Membrane Score: 0.0088
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0056
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008557
    • TAT(Tat/SPI): 0.000655
    • LIPO(Sec/SPII): 0.001089
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 446947320 NCBI
  • RefSeq: WP_001024576 NCBI
  • UniProt: see NWMN_1638

⊟Protein sequence[edit | edit source]

  • MNINKKVTLQRIQTLTELHGAPGFEEEVKNYMTQQMAPYVDEFIENRMGGFFGVKKSKNPNAKRVMIAAHMDEIGFMITNITKNGMIQFTNLGGVANDIWQGQRLVIKNRNGDKIIGVVSNIPKHFRTGSEGAPEIKDLTLDIGAQNEDEVRERGIDIGDTIVPHTPFTQLSEHRYSAKAWDNRYGCVLAIEILELLKDIELDVDLYVGANVQEEVGLRGAKASAEMIDPDVAFVVDCSPANDVKGNQPLSGELGKGTLIRIKDGTMILKPVFRDYLLKLVEAHDIEHQYYMSPGGTDGGEIHKANIGIPTAVIGVCARYIHSTDSVFDIRDYFAARSLLSEAICNLDNNQIETLQYK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: data available for COL

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_RS09200&oldid=82604"
  • This page was last edited on 11 March 2016, at 02:25.
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