From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS03590 [old locus tag: NWMN_0632 ]
  • pan locus tag?: SAUPAN002543000
  • symbol: NWMN_RS03590
  • pan gene symbol?: pitR
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS03590 [old locus tag: NWMN_0632 ]
  • symbol: NWMN_RS03590
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 714592..715209
  • length: 618
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (714592..715209) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0632

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGTTTAGTAAGAAAAAAGATAAGTTTATGGTTCAATTAGAAGAGATGGTTTTCAATCTG
    GATCGTGCTGCTATTGAATTCGGTAAAATGGATTTCAATACACATTTAGATTTAAAAGCA
    TACTCAGACAACATTAAAACTTATGAGTCACATGGTGACGAATTAGTACATCAAGTAATT
    ACTGATTTAAATCAAACATTTATCACACCAATTGAACGTGAAGATATTTTATCATTATGT
    GATGCAATTGATGATGTTTTAGATGCAATTGAAGAAACGGCAGCTATGTTTGAAATGTAT
    TCAATCGAATACACAGATGAATATATGGCTGAGTTTGTTGATAACATTCAAAAAGCAGTT
    GCAGAAATGAAACTTGCTGTCGGCTTATTAGTCGATAAAAAATTATCACATATGCGTATT
    CATTCAATTAATATTAAAGAATTTGAAACAAACTGTGATGGTATTTTAAGACAGTCAATT
    AAACATATTTTCAATAGCGAAACAGATCCAATCACTTTAATTAAAATAAAAGATATTTAT
    GAAAGCATGGAAGAAATCGCTGATAAATGTCAAATCGTAGCAAATAATTTTGAAACTATT
    ATTATGAAAAATAGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    618

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS03590 [old locus tag: NWMN_0632 ]
  • symbol: NWMN_RS03590
  • description: hypothetical protein
  • length: 205
  • theoretical pI: 4.33227
  • theoretical MW: 23738
  • GRAVY: -0.207317

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved TIGR00153 family protein (TIGR00153; HMM-score: 50.4)
  • TheSEED: see NWMN_0632
  • ⊞PFAM:
    PhoU (CL0297) PhoU_div; Protein of unknown function DUF47 (PF01865; HMM-score: 72.4)
    and 3 more
    NTF2 (CL0051) NTF2_YvbJ; YvbJ NTF2-like domain (PF25155; HMM-score: 13)
    TPR (CL0020) V-ATPase_H_C; V-ATPase subunit H (PF11698; HMM-score: 12.7)
    no clan defined Ead_Ea22; Ead/Ea22-like protein (PF13935; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.977
    • Cytoplasmic Membrane Score: 0.0021
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0206
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005397
    • TAT(Tat/SPI): 0.000239
    • LIPO(Sec/SPII): 0.000578
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDFNTHLDLKAYSDNIKTYESHGDELVHQVITDLNQTFITPIEREDILSLCDAIDDVLDAIEETAAMFEMYSIEYTDEYMAEFVDNIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSIKHIFNSETDPITLIKIKDIYESMEEIADKCQIVANNFETIIMKNS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_RS03590&oldid=81861"