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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

organism: Staphylococcus aureus Newman

locus tag: NWMN_2453 [new locus tag: NWMN_RS14100 ]

pan locus tag^?: SAUPAN006216000

symbol: NWMN_2453

pan gene symbol^?: —

synonym:
product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: NWMN_2453 [new locus tag: NWMN_RS14100 ]
symbol: NWMN_2453
product: hypothetical protein
replicon: chromosome
strand: -
coordinates: 2699302..2699469
length: 168
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Gene ID: 5331515 NCBI
RefSeq: YP_001333487 NCBI
BioCyc:
MicrobesOnline: 3708055 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
GTGAGATACGTTATTTCAATAATAATGGGAATTGTATTAGCAATTTGGTCATTTAAACAA
CTGAGTCAAAGTCATTTAGATAGCGGATTTATTTTTTTCTTCATAGTTTATGTGTTGTGT
ATCAGTTGTTTTAATAGCGATAAGCACGATAAAAATAAAAAACGATAG
60
120
168

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: NWMN_2453 [new locus tag: NWMN_RS14100 ]
symbol: NWMN_2453
description: hypothetical protein
length: 55
theoretical pI: 9.81263
theoretical MW: 6488.7
GRAVY: 0.474545

⊟Function[edit | edit source]

TIGRFAM:
exosortase F-associated protein (TIGR04127; HMM-score: 15.6)
TheSEED :
- FIG01108114: hypothetical protein
⊞PFAM:
EMC6 (CL0706) EMC6; EMC6 (PF07019; HMM-score: 16.7)
no clan defined DUF2304; Uncharacterized conserved protein (DUF2304) (PF10066; HMM-score: 14.2)
LysE (CL0292) TauE; Sulfite exporter TauE/SafE (PF01925; HMM-score: 13.8)
and 2 more
no clan defined PqiA; Paraquat-inducible protein A (PF04403; HMM-score: 13.3)
DUF6358; Family of unknown function (DUF6358) (PF19885; HMM-score: 8.3)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 2
⊞
DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9648
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0351
⊞
LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.19773
- TAT(Tat/SPI): 0.001333
- LIPO(Sec/SPII): 0.077303
predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

GI: 151222665 NCBI
RefSeq: YP_001333487 NCBI
UniProt: A0A0H3KAM3 UniProt

⊟Protein sequence[edit | edit source]

MRYVISIIMGIVLAIWSFKQLSQSHLDSGFIFFFIVYVLCISCFNSDKHDKNKKR

⊟Experimental data[edit | edit source]

experimentally validated:
protein localization:
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

MicrobesOnline: no polycistronic organisation predicted

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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