⊟Summary[edit | edit source]

PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus N315
locus tag: SA_RS12120 [old locus tag: SA2109 ]
pan locus tag^?: SAUPAN005796000
symbol: SA_RS12120
pan gene symbol^?: —
• synonym:
• product: alanine glycine permease

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS12120 [old locus tag: SA2109 ]
• symbol: SA_RS12120
• product: alanine glycine permease
• replicon: chromosome
• strand: -
• coordinates: 2371745..2373124
• length: 1380
• essential: no DEG other strains

⊟Accession numbers

• Location: NC_002745 (2371745..2373124) NCBI
• BioCyc: SA_RS12120 BioCyc
• MicrobesOnline: see SA2109

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  121
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  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  961
  1021
  1081
  1141
  1201
  1261
  1321
  
  ATGGAGAACAATGAACTACAAAGGGGATTGAGTGCCCGTCAAATTCAAATGATTGCACTT
  GGTGGTACGATTGGCGTGGGGCTTTTCATGGGTGCCACAAGTACAATTAAATGGACAGGC
  CCATCAGTTATCCTTGCATATTTAATTGCGGGTATCTTTTTATTTTTAATCATGAGAGCA
  ATGGGGGAAATGATTTATTTAAACCCTACAACAGGATCATTTGCAACATTTGCAAGTGAT
  TATATACATCCTGCAGCAGGTTATATGACAGCATGGAGTAATATATTCCAATGGATTGTA
  GTTGGTATGAGTGAGGTCATCGCAGTAGGAGAATATATGAAGTTTTGGTTCCCGGAATTG
  CCAACTTGGATTCCTGGTGTTATTGCTATTTTATTATTAATGGCAGCGAATTTATTCTCG
  GTAAAAGCGTTTGGAGAATTTGAATTTTGGTTTGCTTTAATTAAAGTTGTAACAATTATT
  TTAATGATTATTGCTGGTTTTGGTCTTATTTTCTTTGGTTTTGGAAATGGTGGCCATGCG
  GTAGGTATTTCTAATCTATGGACAAATGGCGGATTTATGCCAAATGGTATTGTTGGTTTC
  TTCTTTGCATTATCAATTGTAATTGGTTCATACCAAGGTGTGGAACTGATAGGTATTACG
  GCAGGTGAAACTAAAGATCCTCAGAAAAATATCGTTAAAGCAGTGAATGGTGTTATCTGG
  AGAATTTTAATTTTCTATTTAGGCGCTATTTTTGTTATTGTTTCAGTGTATCCTTGGAAT
  CAATTAGGAGACATTGGAAGTCCGTTTGTTGCAACATTTGCTAAAATCGGTATTACATTT
  GCAGCTGGATTAATTAACTTTGTTGTATTAACTGCAGCAATGTCAGGATGTAACTCAGGT
  ATTTTCAGTGCGAGTCGTATGATTTATACACTTGCTCATAAAGGTGAAATGCCAAAAATA
  TTTACTAAAATCATGAGAAATGGTGTACCATTGTACACTGTTGTAGCAGTATCTCTTGGT
  ATTTTAATTGGTGCTTTATTAAACGTAATTTTACCTTTATATATCGATGGAGCGAAGAGT
  ATTTTCGTATACGTTTATAGTGCGTCTATTTTACCAGGTATGATTCCTTGGTTTATGATT
  TTATTCAGTCACTTACGTTTTAGAAAATTACATCCTGAAGAATTGGAAGGTCACCCATTC
  AAAATGCCTGGTGGCGCAGTAACTAACTATTTAACAATCTTATTCTTAATATTAGTATTG
  GTTGGTATGGTATTTAATGTTGAAACTAGAATATCAGTGCTAATTGGTGTCATCTTCTTA
  ACGATTGTAACGATTTATTACTTTATTAGATATAATAAAAATAATGTAAAAGCAAAATAG
  60
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  1140
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  1260
  1320
  1380
  

⊟Protein

⊟General

• locus tag: SA_RS12120 [old locus tag: SA2109 ]
• symbol: SA_RS12120
• description: alanine glycine permease
• length: 459
• theoretical pI: 9.70264
• theoretical MW: 50351.8
• GRAVY: 0.870588

⊟Function

• ⊞⊞TIGRFAM:
  Metabolism Transport and binding proteins Amino acids, peptides and amines GABA permease (TIGR01773; HMM-score: 355.9)
  and 7 more
  Metabolism Transport and binding proteins Amino acids, peptides and amines amino acid permease (yeast) (TIGR00913; HMM-score: 272.2)
  Metabolism Transport and binding proteins Amino acids, peptides and amines amino acid transporter (TIGR00909; HMM-score: 113.8)
  Metabolism Transport and binding proteins Amino acids, peptides and amines ethanolamine permease (TIGR00908; HMM-score: 106.8)
  Metabolism Transport and binding proteins Amino acids, peptides and amines cationic amino acid transport permease (TIGR00906; HMM-score: 69.1)
  Metabolism Transport and binding proteins Amino acids, peptides and amines L-type amino acid transporter (TIGR00911; HMM-score: 41.2)
  histidine-histamine antiporter (TIGR04298; HMM-score: 23.6)
  putative glutamate/gamma-aminobutyrate antiporter (TIGR03813; HMM-score: 23.5)
• TheSEED: see SA2109
• ⊞⊞PFAM:
  APC (CL0062) AA_permease; Amino acid permease (PF00324; HMM-score: 371.9)
  and 2 more
  AA_permease_2; Amino acid permease (PF13520; HMM-score: 118.8)
  no clan defined PrgI; PrgI family protein (PF12666; HMM-score: 18.4)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞⊞PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 12
• ⊞⊞DeepLocPro: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 0.9998
  • Cell wall & surface Score: 0
  • Extracellular Score: 0.0002
• LocateP:
• ⊞⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.007743
  • TAT(Tat/SPI): 0.010608
  • LIPO(Sec/SPII): 0.081992
• predicted transmembrane helices (TMHMM): 11

⊟Accession numbers

• GI: 446351819 NCBI
• RefSeq: WP_000429674 NCBI
• UniProt: see SA2109

⊟Protein sequence

• MENNELQRGLSARQIQMIALGGTIGVGLFMGATSTIKWTGPSVILAYLIAGIFLFLIMRAMGEMIYLNPTTGSFATFASDYIHPAAGYMTAWSNIFQWIVVGMSEVIAVGEYMKFWFPELPTWIPGVIAILLLMAANLFSVKAFGEFEFWFALIKVVTIILMIIAGFGLIFFGFGNGGHAVGISNLWTNGGFMPNGIVGFFFALSIVIGSYQGVELIGITAGETKDPQKNIVKAVNGVIWRILIFYLGAIFVIVSVYPWNQLGDIGSPFVATFAKIGITFAAGLINFVVLTAAMSGCNSGIFSASRMIYTLAHKGEMPKIFTKIMRNGVPLYTVVAVSLGILIGALLNVILPLYIDGAKSIFVYVYSASILPGMIPWFMILFSHLRFRKLHPEELEGHPFKMPGGAVTNYLTILFLILVLVGMVFNVETRISVLIGVIFLTIVTIYYFIRYNKNNVKAK

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator: CcpA, CodY see SA2109

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications