PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

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⊟Summary

• pan ID^?: SAUPAN005363000
• symbol^?: —
• synonym:
• ⊟description^?: copper-sensing transcriptional repressor CsoR

  descriptions from strain specific annotations:

  • copper-sensing transcriptional repressor CsoR
  • copper-sensitive operon repressor CsoR, putative
  • Protein of hypothetical function
  • pseudogene
• strand^?: -
• coordinates^?: 5538293..5538586
• synteny block^?: BlockID0041600
• occurrence^?: in 100% of 34 strains

csoR : copper-sensing transcriptional repressor

⊟Orthologs

COL:
SACOL2078
N315:
SA1890
NCTC8325:
SAOUHSC_02322
Newman:
NWMN_1991
USA300_FPR3757:
SAUSA300_2043
04-02981:
SA2981_2028
08BA02176:
C248_2098
11819-97:
MS7_2103 (csoR)
6850:
RSAU_001926
71193:
ST398NM01_2128
ECT-R 2:
ECTR2_1943
ED133:
SAOV_2128c
ED98:
SAAV_2141
HO 5096 0412:
SAEMRSA15_19960
JH1:
SaurJH1_2162
JH9:
SaurJH9_2124
JKD6008:
SAA6008_02125
JKD6159:
SAA6159_02001
JSNZ:
JSNZ_002048 (csoR)
LGA251:
SARLGA251_18890
M013:
M013TW_2045
MRSA252:
SAR2175
MSHR1132:
SAMSHR1132_19110
MSSA476:
SAS1991
Mu3:
SAHV_2072
Mu50:
SAV2087
MW2:
MW2010
RF122:
SAB1971c
ST398:
SAPIG2128
T0131:
SAT0131_02245
TCH60:
HMPREF0772_11106
TW20:
SATW20_22260
USA300_TCH1516:
USA300HOU_2082
VC40:
SAVC_09315

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• ⊞alignment of orthologues:
  • substitution groups
  • chemical property
  • transmembrane probability
  • alpha helix
  • beta sheet
  • beta turn
  • flexibility

  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  N315            ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  NCTC8325        ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  Newman          MGYSIVRNVNEGVNAMTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  USA300_FPR3757  ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
                                 *********************************************
  
  COL             TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  N315            TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  NCTC8325        TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  Newman          TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  USA300_FPR3757  TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
                  ****************************************************
  

  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  N315            ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  NCTC8325        ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  Newman          MGYSIVRNVNEGVNAMTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  USA300_FPR3757  ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
                                 *********************************************
  
  COL             TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  N315            TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  NCTC8325        TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  Newman          TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  USA300_FPR3757  TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
                  ****************************************************
  

  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  N315            ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  NCTC8325        ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  Newman          MGYSIVRNVNEGVNAMTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  USA300_FPR3757  ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
                                 *********************************************
  
  COL             TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  N315            TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  NCTC8325        TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  Newman          TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  USA300_FPR3757  TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
                  ****************************************************
  

  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  N315            ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  NCTC8325        ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  Newman          MGYSIVRNVNEGVNAMTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  USA300_FPR3757  ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
                                 *********************************************
  
  COL             TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  N315            TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  NCTC8325        TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  Newman          TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  USA300_FPR3757  TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
                  ****************************************************
  

  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  N315            ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  NCTC8325        ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  Newman          MGYSIVRNVNEGVNAMTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  USA300_FPR3757  ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
                                 *********************************************
  
  COL             TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  N315            TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  NCTC8325        TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  Newman          TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  USA300_FPR3757  TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
                  ****************************************************
  

  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  N315            ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  NCTC8325        ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  Newman          MGYSIVRNVNEGVNAMTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  USA300_FPR3757  ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
                                 *********************************************
  
  COL             TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  N315            TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  NCTC8325        TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  Newman          TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  USA300_FPR3757  TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
                  ****************************************************
  

  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  N315            ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  NCTC8325        ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  Newman          MGYSIVRNVNEGVNAMTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
  USA300_FPR3757  ---------------MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVL
                                 *********************************************
  
  COL             TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  N315            TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  NCTC8325        TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  Newman          TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
  USA300_FPR3757  TQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD
                  ****************************************************