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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

organism: Staphylococcus aureus N315

locus tag: SA1689 [new locus tag: SA_RS09695 ]

pan locus tag^?: SAUPAN004855000

symbol: SA1689

pan gene symbol^?: —

synonym:
product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SA1689 [new locus tag: SA_RS09695 ]
symbol: SA1689
product: hypothetical protein
replicon: chromosome
strand: -
coordinates: 1937201..1937515
length: 315
essential: no DEG other strains

⊟Accession numbers[edit | edit source]

Gene ID: 1124572 NCBI
RefSeq: NP_374979 NCBI
BioCyc: see SA_RS09695
MicrobesOnline: 104005 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
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121
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ATGGAACAGAAGAAATTGAGTGAGATGTCTGAGCCAGAATTAAGACACGAAATACAACTT
TATAAAGAGAAAATGAGAAAAGCTGAGATGAATGGTATTTTAAATGAATATGACGTTTAT
CAAAGTAAAGTAATTGTTGCCGAAAGTTACTTAGTAGACAGAAAAAAGATAGAAATTGGT
AAAATTTATAAACTGACTGATGGCAGTAATCAATATTTTAAAGTAGAAAGATTAAAAGGT
ATTTTTGCGTGGGGGTTTAGATTTAATAGCGATGAACCCGAAGAAGGCTTACCTATAGCG
TTATTACAATTATAG
60
120
180
240
300
315

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SA1689 [new locus tag: SA_RS09695 ]
symbol: SA1689
description: hypothetical protein
length: 104
theoretical pI: 5.96297
theoretical MW: 12305.1
GRAVY: -0.611538

⊟Function[edit | edit source]

TIGRFAM:
⊞
TheSEED :
- Uncharacterized protein YfhH
CBSS-176280.1.peg.1561 Transcription regulator CDS_ID OB0894
and 1 more
CBSS-261594.1.peg.788 Transcription regulator CDS_ID OB0894
PFAM:
SH3 (CL0010) DUF1811; Protein of unknown function (DUF1811) (PF08838; HMM-score: 130.5)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.78
- Cytoplasmic Membrane Score: 8.16
- Cellwall Score: 0.06
- Extracellular Score: 0.01
- Internal Helices: 0
⊞
DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.8887
- Cytoplasmic Membrane Score: 0.0472
- Cell wall & surface Score: 0.0019
- Extracellular Score: 0.0622
⊞
LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002945
- TAT(Tat/SPI): 0.000311
- LIPO(Sec/SPII): 0.00048
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 15927446 NCBI
RefSeq: NP_374979 NCBI
UniProt: A0A0H3JN55 UniProt

⊟Protein sequence[edit | edit source]

MEQKKLSEMSEPELRHEIQLYKEKMRKAEMNGILNEYDVYQSKVIVAESYLVDRKKIEIGKIYKLTDGSNQYFKVERLKGIFAWGFRFNSDEPEEGLPIALLQL

⊟Experimental data[edit | edit source]

experimentally validated: data available for COL, NCTC8325
protein localization: data available for COL
quantitative data / protein copy number per cell: data available for COL
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

MicrobesOnline: SA1687 < SA1688 < SA1689 < recX

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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