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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1433 [new locus tag: SA_RS08085 ]
  • pan locus tag?: SAUPAN004199000
  • symbol: SA1433
  • pan gene symbol?: pxpA
  • synonym:
  • product: LamB/YcsF family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1433 [new locus tag: SA_RS08085 ]
  • symbol: SA1433
  • product: LamB/YcsF family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1636542..1637294
  • length: 753
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGCGAGTTGATTTGAATTGTGATTTAGGCGAAGCATTTGGAAATTATTCCTTTGGTGGT
    GATCATCAAATTATTCCGTTAATTACAAGTGCGAATGTTGCTTGTGGTTTTCACGCTGGT
    GATGAAAATGTAATGAATGAAACGGTAAAACTTGCCAAAGCACATAATGTTGCAGTAGGT
    GCACATCCTGGTTTACCTGATTTGAAAGGCTTTGGCAGACGAAATATAGATATCTCTAAC
    GACGAGATTTATAATTTGATGATTTATCAATTAGGTGCATTACAAGGGTTTTGTCGCATT
    CATCAACTTAAAATTAATCATGTTAAACCGCATGGTGCATTGTATCAGATGGGTGCAAAA
    GACAGAGAAATAGCAAACGTTATAGCACAAGCTGTTTATGACTTTGATCCATCACTAGTG
    TTAGTAGGATTAGCAAATTCATATCTAATTTCAGAAGCAAAGAATGTCGGATTAATTACA
    GCTTCTGAAGTGTTTGCTGATAGACGATACGAAGATGATGGGCAGCTCGTTAGTAGAAAA
    GAAAGTGATGCTGTGATTACTGATACTGACGAAGCACTTAAGCAGGTTTTAAAGATGGTG
    AAGGAAAATAAAGTTATTTCAAAAAACAATAAGGAAGTAACGTTACAAGCAGATACAATT
    TGTGTGCATGGTGATGGAGAACATGCATTATTATTTGTTTCGAAAATTAGAGAAATTTTA
    ATGAAAGAAGGCATTGATATTCAATCCTTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    753

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1433 [new locus tag: SA_RS08085 ]
  • symbol: SA1433
  • description: LamB/YcsF family protein
  • length: 250
  • theoretical pI: 5.55687
  • theoretical MW: 27462.2
  • GRAVY: -0.114

⊟Function[edit | edit source]

  • TIGRFAM:
  • ⊞TheSEED  :
    • 5-oxoprolinase subunit A (EC 3.5.2.9)
    Allophanate hydrolase 2 and Biotin carboxylase cluster  Lactam utilization protein LamB
    and 1 more
    EC699-706  Lactam utilization protein LamB
  • ⊞PFAM:
    GH_CE (CL0158) LamB_YcsF; LamB/YcsF family (PF03746; HMM-score: 341.6)
    and 1 more
    OB (CL0021) S1; S1 RNA binding domain (PF00575; HMM-score: 13.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9962
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0037
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.034443
    • TAT(Tat/SPI): 0.006954
    • LIPO(Sec/SPII): 0.024372
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRVDLNCDLGEAFGNYSFGGDHQIIPLITSANVACGFHAGDENVMNETVKLAKAHNVAVGAHPGLPDLKGFGRRNIDISNDEIYNLMIYQLGALQGFCRIHQLKINHVKPHGALYQMGAKDREIANVIAQAVYDFDPSLVLVGLANSYLISEAKNVGLITASEVFADRRYEDDGQLVSRKESDAVITDTDEALKQVLKMVKENKVISKNNKEVTLQADTICVHGDGEHALLFVSKIREILMKEGIDIQSL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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