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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08675 [old locus tag: SACOL1701 ]
  • pan locus tag?: SAUPAN004252000
  • symbol: SACOL_RS08675
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS08675 [old locus tag: SACOL1701 ]
  • symbol: SACOL_RS08675
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1732827..1733147
  • length: 321
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1732827..1733147) NCBI
  • BioCyc: SACOL_RS08675 BioCyc
  • MicrobesOnline: see SACOL1701

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGATTACTGTTGATATTACAGTTAATGATGAAGGCAAAGTAACAGACGTTATTATGGAT
    GGCCATGCTGACCATGGTGAATATGGTCATGATATCGTTTGTGCTGGAGCTTCAGCTGTA
    TTGTTTGGTAGTGTTAATGCGATTATAGGATTGACATCTGAGAGACCAGATATCAATTAT
    GACGACAATGGTGGTCATTTTCATATAAGAAGCGTTGATACAAACAACGATGAAGCGCAA
    CTAATTCTTCAAACAATGCTTGTGTCTTTACAAACTATTGAAGAAGAATATAATGAGAAT
    ATTAGATTAAATTATAAGTGA
    60
    120
    180
    240
    300
    321

⊟Protein[edit | edit source]

  • 4PEO
    PDB
Protein Data Bank: 4PEO

⊟General[edit | edit source]

  • locus tag: SACOL_RS08675 [old locus tag: SACOL1701 ]
  • symbol: SACOL_RS08675
  • description: hypothetical protein
  • length: 106
  • theoretical pI: 4.05297
  • theoretical MW: 11691.8
  • GRAVY: -0.250943

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL1701
  • PFAM:
    no clan defined Peptidase_Prp; Cysteine protease Prp (PF04327; HMM-score: 86.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9845
    • Cytoplasmic Membrane Score: 0.0078
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0074
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015261
    • TAT(Tat/SPI): 0.000866
    • LIPO(Sec/SPII): 0.001304
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 446556346 NCBI
  • RefSeq: WP_000633692 NCBI
  • UniProt: see SACOL1701

⊟Protein sequence[edit | edit source]

  • MITVDITVNDEGKVTDVIMDGHADHGEYGHDIVCAGASAVLFGSVNAIIGLTSERPDINYDDNGGHFHIRSVDTNNDEAQLILQTMLVSLQTIEEEYNENIRLNYK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1701
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: no data available

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS08675&oldid=71775"
  • This page was last edited on 10 March 2016, at 21:22.
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