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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07005 [old locus tag: SACOL1376 ]
  • pan locus tag?: SAUPAN003716000
  • symbol: SACOL_RS07005
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS07005 [old locus tag: SACOL1376 ]
  • symbol: SACOL_RS07005
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1379967..1380206
  • length: 240
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1379967..1380206) NCBI
  • BioCyc: SACOL_RS07005 BioCyc
  • MicrobesOnline: see SACOL1376

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    TTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAA
    GTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAG
    AGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAGAAGGT
    AATGATGTAACACCTGAAAAAATTAAAGAGATACAACAAAAAAGAGATAATAAAAATTAA
    60
    120
    180
    240

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS07005 [old locus tag: SACOL1376 ]
  • symbol: SACOL_RS07005
  • description: hypothetical protein
  • length: 79
  • theoretical pI: 9.63152
  • theoretical MW: 9203.33
  • GRAVY: -1.32025

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA (cytosine-5-)-methyltransferase (TIGR00675; EC 2.1.1.37; HMM-score: 14.4)
  • TheSEED: see SACOL1376
  • ⊞PFAM:
    no clan defined DUF896; Bacterial protein of unknown function (DUF896) (PF05979; HMM-score: 108.8)
    and 1 more
    PH (CL0266) EbsA; EbsA-like protein (PF17255; HMM-score: 11.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9952
    • Cytoplasmic Membrane Score: 0.0006
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0042
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004735
    • TAT(Tat/SPI): 0.000565
    • LIPO(Sec/SPII): 0.000817
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 445993496 NCBI
  • RefSeq: WP_000071351 NCBI
  • UniProt: see SACOL1376

⊟Protein sequence[edit | edit source]

  • MSNSDLNIERINELAKKKKEVGLTQEEAKEQTALRKAYLESFRKGFKQQIENTKVIDPEGNDVTPEKIKEIQQKRDNKN

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1376
  • protein localization: see SACOL1376
  • quantitative data / protein copy number per cell: see SACOL1376
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: no data available

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS07005&oldid=57636"
  • This page was last edited on 10 March 2016, at 13:50.
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