PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary[edit | edit source]

pan ID^?: SAUPAN005106000
symbol^?: —
synonym:
⊟
description^?: phi PVL orf 39-like protein
- phi PVL orf 39-like protein
- phage protein
strand^?: -
coordinates^?: 5255530..5255931
synteny block^?: BlockID0039610
occurrence^?: in 35% of 34 strains

⊟Orthologs[edit | edit source]

COL:

—

N315:

SA1797

NCTC8325:

SAOUHSC_02223

Newman:

—

USA300_FPR3757:

—

JSNZ:

—

04-02981:

SA2981_1949

08BA02176:

—

11819-97:

MS7_2021

6850:

—

71193:

ST398NM01_2947

ECT-R 2:

ECTR2_1860

ED133:

—

ED98:

—

HO 5096 0412:

SAEMRSA15_19110

JH1:

SaurJH1_2081

JH9:

SaurJH9_2044

JKD6008:

—

JKD6159:

—

LGA251:

—

M013:

—

MRSA252:

SAR2088

MSHR1132:

—

MSSA476:

SAS1909

Mu3:

—

Mu50:

—

MW2:

MW1926

RF122:

—

ST398:

—

T0131:

—

TCH60:

—

TW20:

—

USA300_TCH1516:

—

VC40:

—

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

⊞
alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.505)

N315            MYYKTGDVCRKIFNVDGFDFQLRVKKRAYSVEIVVLDHEGNSIDGLLVSDENDLYTALDI
NCTC8325        MYYKIGDVCQKVINVDGFDFKLAVKKQDYSILVNVLDLEDRFIDGINITDENDLYTALDI
                **** ****:*::*******:* ***: **: : *** *.. ***: ::***********

N315            LKQSIYEWIENNTDEQDRLINLVMKW
NCTC8325        LNQSIYEWIEENTDERDRLINLVMRW
                *:********:****:********:*
CLUSTAL format alignment by MAFFT L-INS-i (v7.505)

N315            MYYKTGDVCRKIFNVDGFDFQLRVKKRAYSVEIVVLDHEGNSIDGLLVSDENDLYTALDI
NCTC8325        MYYKIGDVCQKVINVDGFDFKLAVKKQDYSILVNVLDLEDRFIDGINITDENDLYTALDI
                **** ****:*::*******:* ***: **: : *** *.. ***: ::***********

N315            LKQSIYEWIENNTDEQDRLINLVMKW
NCTC8325        LNQSIYEWIEENTDERDRLINLVMRW
                *:********:****:********:*
CLUSTAL format alignment by MAFFT L-INS-i (v7.505)

N315            MYYKTGDVCRKIFNVDGFDFQLRVKKRAYSVEIVVLDHEGNSIDGLLVSDENDLYTALDI
NCTC8325        MYYKIGDVCQKVINVDGFDFKLAVKKQDYSILVNVLDLEDRFIDGINITDENDLYTALDI
                **** ****:*::*******:* ***: **: : *** *.. ***: ::***********

N315            LKQSIYEWIENNTDEQDRLINLVMKW
NCTC8325        LNQSIYEWIEENTDERDRLINLVMRW
                *:********:****:********:*
CLUSTAL format alignment by MAFFT L-INS-i (v7.505)

N315            MYYKTGDVCRKIFNVDGFDFQLRVKKRAYSVEIVVLDHEGNSIDGLLVSDENDLYTALDI
NCTC8325        MYYKIGDVCQKVINVDGFDFKLAVKKQDYSILVNVLDLEDRFIDGINITDENDLYTALDI
                **** ****:*::*******:* ***: **: : *** *.. ***: ::***********

N315            LKQSIYEWIENNTDEQDRLINLVMKW
NCTC8325        LNQSIYEWIEENTDERDRLINLVMRW
                *:********:****:********:*
CLUSTAL format alignment by MAFFT L-INS-i (v7.505)

N315            MYYKTGDVCRKIFNVDGFDFQLRVKKRAYSVEIVVLDHEGNSIDGLLVSDENDLYTALDI
NCTC8325        MYYKIGDVCQKVINVDGFDFKLAVKKQDYSILVNVLDLEDRFIDGINITDENDLYTALDI
                **** ****:*::*******:* ***: **: : *** *.. ***: ::***********

N315            LKQSIYEWIENNTDEQDRLINLVMKW
NCTC8325        LNQSIYEWIEENTDERDRLINLVMRW
                *:********:****:********:*
CLUSTAL format alignment by MAFFT L-INS-i (v7.505)

N315            MYYKTGDVCRKIFNVDGFDFQLRVKKRAYSVEIVVLDHEGNSIDGLLVSDENDLYTALDI
NCTC8325        MYYKIGDVCQKVINVDGFDFKLAVKKQDYSILVNVLDLEDRFIDGINITDENDLYTALDI
                **** ****:*::*******:* ***: **: : *** *.. ***: ::***********

N315            LKQSIYEWIENNTDEQDRLINLVMKW
NCTC8325        LNQSIYEWIEENTDERDRLINLVMRW
                *:********:****:********:*
CLUSTAL format alignment by MAFFT L-INS-i (v7.505)

N315            MYYKTGDVCRKIFNVDGFDFQLRVKKRAYSVEIVVLDHEGNSIDGLLVSDENDLYTALDI
NCTC8325        MYYKIGDVCQKVINVDGFDFKLAVKKQDYSILVNVLDLEDRFIDGINITDENDLYTALDI
                **** ****:*::*******:* ***: **: : *** *.. ***: ::***********

N315            LKQSIYEWIENNTDEQDRLINLVMKW
NCTC8325        LNQSIYEWIEENTDERDRLINLVMRW
                *:********:****:********:*

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⊟Summary[edit | edit source]

Contents

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

N315
NCTC8325

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⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]