From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08090 [old locus tag: SACOL1588 ]
  • pan locus tag?: SAUPAN004107000
  • symbol: SACOL_RS08090
  • pan gene symbol?: pepQ2
  • synonym:
  • product: peptidase M24 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS08090 [old locus tag: SACOL1588 ]
  • symbol: SACOL_RS08090
  • product: peptidase M24 family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1622165..1623226
  • length: 1062
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1622165..1623226) NCBI
  • BioCyc: SACOL_RS08090 BioCyc
  • MicrobesOnline: see SACOL1588

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAGCAGAATAACACAAGTGCATCGTATTTTAGAACAAAAACATTTAGATGCGATTATC
    ATTCTTTCGGATTACAATAGAAGATATTTATCAGGTTTTACTGGTACCAGTGGAGCACTT
    ATCATATCTAAAGATAAACAATATTTGATAACAGACTTTAGATATATTGATCAAGCAACT
    AAGCAGGCGCCAAATTATGAAATTATTAATCGTAAATCTACTATTATTGGTGAGATTAAA
    GAATTGCTACACCAAGAAAATTTTGAAAATGTAGGTTTTGAGGGGCATCATGTAAGTTAT
    GATACATACCTTGAATTAAATAAAAGCCGTATATCATTAATAAGCATTTCTAATACTGTA
    GATAAAATTAGAGACGTCAAAGATGCTGACGAAATTGCTTTAATTCAAAAAGCAGCTAAT
    ATTGTTGATGAAACATATGAATATATTTTAACTGTTGTAAAAGCAGGCATGACTGAAAAA
    GAATTAAAGGCAATATTAGAAAGCAAAATGCTAGAATTAGGAGCAGATGGACCATCATTC
    GATACGATTGTAGCATCTGGTCATAGAGGTGCATTACCACATGGTGTTGCAAGTGATAAA
    ATTATTGAAAAAGGCGACATGATTACATTAGATTTTGGCGCGTATTATAACGGCTATTGT
    TCAGATATTACTAGAACATTTGCTATTGGAGAACCAGATCCTAAACTGAAAGAAATATAT
    CAAATAGTACTTGAATCTCAAATGAAAGCAATTAATGAGATTAGACCTGGCATGACTGGT
    GCAGAAGCTGATGCCATTTCAAGAAACTATTTAGAGTCAAAAGGGTATGGAAAAGAATTT
    GGACATTCACTAGGACATGGTATTGGTTTAGAAATCCATGAAGGGCCAATGCTGGCTCGT
    ACGATACAAGATAAACTTCAAGTTAACAACTGTGTTACAGTAGAACCTGGTGTTTATATA
    GAAGGTTTGGGCGGTATAAGAATAGAAGATGATATTTTAATTACAGAAAATGGTTGTCAA
    GTCTTTACTAAATGCACAAAAGACCTTATAGTTTTAACATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1062

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS08090 [old locus tag: SACOL1588 ]
  • symbol: SACOL_RS08090
  • description: peptidase M24 family protein
  • length: 353
  • theoretical pI: 5.06349
  • theoretical MW: 39337.6
  • GRAVY: -0.207932

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 3.4.13.9?  ExPASy
    Xaa-Pro dipeptidase Hydrolysis of Xaa-|-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-|-Pro
  • ⊞TIGRFAM:
    Genetic information processing Protein fate Protein modification and repair methionine aminopeptidase, type I (TIGR00500; EC 3.4.11.18; HMM-score: 100.5)
    and 3 more
    ectoine utilization protein EutD (TIGR02993; EC 3.-.-.-; HMM-score: 64.2)
    Genetic information processing Protein fate Protein modification and repair methionine aminopeptidase, type II (TIGR00501; EC 3.4.11.18; HMM-score: 40.1)
    Unknown function General DNA-binding protein, 42 kDa (TIGR00495; HMM-score: 15.1)
  • TheSEED: see SACOL1588
  • ⊞PFAM:
    no clan defined Peptidase_M24; Metallopeptidase family M24 (PF00557; HMM-score: 252.2)
    and 2 more
    AMP_N-like (CL0356) Creatinase_N; Creatinase/Prolidase N-terminal domain (PF01321; HMM-score: 101.3)
    Met_repress (CL0057) UPF0150; UPF0150-like (PF21748; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9952
    • Cytoplasmic Membrane Score: 0.0005
    • Cell wall & surface Score: 0.0008
    • Extracellular Score: 0.0035
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016788
    • TAT(Tat/SPI): 0.017013
    • LIPO(Sec/SPII): 0.001153
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSRITQVHRILEQKHLDAIIILSDYNRRYLSGFTGTSGALIISKDKQYLITDFRYIDQATKQAPNYEIINRKSTIIGEIKELLHQENFENVGFEGHHVSYDTYLELNKSRISLISISNTVDKIRDVKDADEIALIQKAANIVDETYEYILTVVKAGMTEKELKAILESKMLELGADGPSFDTIVASGHRGALPHGVASDKIIEKGDMITLDFGAYYNGYCSDITRTFAIGEPDPKLKEIYQIVLESQMKAINEIRPGMTGAEADAISRNYLESKGYGKEFGHSLGHGIGLEIHEGPMLARTIQDKLQVNNCVTVEPGVYIEGLGGIRIEDDILITENGCQVFTKCTKDLIVLT

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1588
  • protein localization: see SACOL1588
  • quantitative data / protein copy number per cell: see SACOL1588
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS08090&oldid=97507"