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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1365 [new locus tag: SA_RS07725 ]
- pan locus tag?: SAUPAN004112000
- symbol: SA1365
- pan gene symbol?: gcvPB
- synonym:
- product: glycine dehydrogenase subunit 2
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1365 [new locus tag: SA_RS07725 ]
- symbol: SA1365
- product: glycine dehydrogenase subunit 2
- replicon: chromosome
- strand: -
- coordinates: 1572869..1574341
- length: 1473
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1124205 NCBI
- RefSeq: NP_374648 NCBI
- BioCyc: see SA_RS07725
- MicrobesOnline: 103674 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1441ATGACTAGTAAATCAAGTCCATTAATTTTTGAAAGATCTCGTGAAGGCAGATATGCATAT
TCATTACCAAAAAGTGATATTAAAACAAATTCTGTTGAGTCATTGTTAGATGATAAATTT
ATTCGTAAAAACAAAGCGGAGTTTCCTGAAGTTGCTGAACTAGACTTAGTACGTCATTAT
ACTGAACTTTCAAATAAAAATTTCGGTGTAGACAACGGATTTTATCCATTGGGTTCATGT
ACGATGAAGTATAATCCTAAAATTAATGAAAAGGTTGCTAGAATACCAGGATTCAGTGAA
TCACATCCATTACAAGATGAAGACCAAGTTCAAGGTTCATTAGAAATTATTTATAGTTTG
CAAGAAGAATTAAAAGAAATTACTGGTATGGATGAGGTAACATTACAACCAGCTGCTGGT
GCACATGGTGAATGGACTGCATTGATGATATTTAAAGCTTATCATGAGAATAATGGTGAA
GGTCATCGTGATGAAGTCATTGTGCCAGATTCTGCGCATGGTACGAATCCAGCCTCAGCT
TCATTTGCAGGATTTAAATCAGTTACTGTAAAATCAAACGAACGTGGCGAAGTTGATATT
GATGACTTGAAACGTGTTGTAAATGAAAATACAGCAGCTATTATGTTAACTAATCCAAAT
ACTTTAGGTATTTTCGAAAAAAACATTATGGAAATCCGTGAAATCGTCCATAATGCTGGT
GGTCTATTATATTATGATGGTGCGAATTTAAACGCTATTATGGACAAAGTTCGCCCAGGA
GATATGGGATTTGATGCTGTTCATTTAAACTTGCATAAAACATTTACTGGTCCACATGGT
GGCGGCGGTCCTGGTTCAGGTCCAGTCGGTGTAGTAAAAGAACTAGCAAGTTACTTACCA
AAGCCAATGGTTATTAAAGATGGCGACAAATTTAAATATGATAATGACATTAAAAATTCT
ATCGGACGTGTAAAACCATTTTATGGTAACTTTGGTATTTACTTAAGAGCTTATACGTAT
ATTCGAACTATGGGAGCAACTGGACTTAAAGAGGTTTCGGAAGCAGCGGTTCTTAATGCG
AATTATATTAAAGCACGTTTATCTGAACACTTTGAAATACCTTATAAACAATATTGTAAA
CATGAGTTTGTGTTAAGTGGTGTGCGTCAAAAAGAATTTGGTGTACGTACTTTAGACATG
GCTAAGCGATTATTAGATTTCGGTGTACATCCACCAACAATATACTTCCCATTAAATGTT
GAAGAAGGTATGATGATTGAACCGACTGAGACAGAGTCTAAAGAAACACTTGATTATTTT
ATCGATACATTAATTAGTATTGCTGAAGAAGCTAAAAATGATCCTGATAAAGTGCTAGAA
GCACCACATACAACTGTGATTGATCGATTAGACGAAGCTACAGCTGCTCGTAAACCAATA
TTAAAGTTTGAAAATCTTAAACAGGAAAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1365 [new locus tag: SA_RS07725 ]
- symbol: SA1365
- description: glycine dehydrogenase subunit 2
- length: 490
- theoretical pI: 5.51646
- theoretical MW: 54782.7
- GRAVY: -0.447755
⊟Function[edit | edit source]
- ⊞reaction: EC 1.4.4.2? ExPASy
- ⊞TIGRFAM: Energy metabolism Amino acids and amines glycine dehydrogenase (TIGR00461; EC 1.4.4.2; HMM-score: 405)and 14 more
- ⊞TheSEED :
- Glycine dehydrogenase (aminomethyl-transferring) (glycine cleavage system P2 protein) (EC 1.4.4.2)
Amino Acids and Derivatives Alanine, serine, and glycine Glycine and Serine Utilization Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)and 2 more - ⊞PFAM: PLP_aminotran (CL0061) GcvP2_C; Glycine dehydrogenase, C-terminal domain (PF21478; HMM-score: 100)and 5 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors: pyridoxal 5'-phosphate
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTSKSSPLIFERSREGRYAYSLPKSDIKTNSVESLLDDKFIRKNKAEFPEVAELDLVRHYTELSNKNFGVDNGFYPLGSCTMKYNPKINEKVARIPGFSESHPLQDEDQVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHENNGEGHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNERGEVDIDDLKRVVNENTAAIMLTNPNTLGIFEKNIMEIREIVHNAGGLLYYDGANLNAIMDKVRPGDMGFDAVHLNLHKTFTGPHGGGGPGSGPVGVVKELASYLPKPMVIKDGDKFKYDNDIKNSIGRVKPFYGNFGIYLRAYTYIRTMGATGLKEVSEAAVLNANYIKARLSEHFEIPYKQYCKHEFVLSGVRQKEFGVRTLDMAKRLLDFGVHPPTIYFPLNVEEGMMIEPTETESKETLDYFIDTLISIAEEAKNDPDKVLEAPHTTVIDRLDEATAARKPILKFENLKQEK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SA1365 < SA1366 < gcvT < SA1368
⊟Regulation[edit | edit source]
- ⊞regulator: Gly-box (transcription antitermination) regulon
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊞Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊞Other Information[edit | edit source]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Alexander Scherl, Patrice François, Manuela Bento, Jacques M Deshusses, Yvan Charbonnier, Véronique Converset, Antoine Huyghe, Nadia Walter, Christine Hoogland, Ron D Appel, Jean-Charles Sanchez, Catherine G Zimmermann-Ivol, Garry L Corthals, Denis F Hochstrasser, Jacques Schrenzel
Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth.
J Microbiol Methods: 2005, 60(2);247-57
[PubMed:15590099] [WorldCat.org] [DOI] (P p)