PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

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⊟Summary

• organism: Staphylococcus aureus Newman
locus tag: NWMN_1903 [new locus tag: NWMN_RS10955 ]
pan locus tag^?: SAUPAN001383000
symbol: NWMN_1903
pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_1903 [new locus tag: NWMN_RS10955 ]
• symbol: NWMN_1903
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2115939..2116334
• length: 396
• essential: unknown

⊟Accession numbers

• Gene ID: 5331167 NCBI
• RefSeq: YP_001332937 NCBI
• BioCyc:
• MicrobesOnline: 3707491 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

• 1
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  GTGTGGGAAATGATTAAAAAACTTAAAAATATGGATGGGTTCGACATCTTTATTGTTGGA
  ATACTGTCATTATTCGGTATAACCGCATTGCTACTTGTTGTCGCATTGCCTATCTATACA
  GTGGCTAGTTACCAAAACAAAGAAGTACATCAAGGGACAATTACAGATAAATATAACAAA
  AGACAAGATAAAGAGGACAAATTCTATATTGTATTAGATGATAAACAAGTCATCGAAAAC
  TCAGACTTATCCTTCAAAGGAAAGTTTGATAGCGCAGACATACAAGCTAGGTTAAAAGTA
  GGTGATAAAGTAAAAGTTAAGACGATTGGATATAGAATACACTTTTTAAATTTATATCCG
  GTCTTATACGAAGTAAAGAAGGTAGATAAAAAATGA
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  396
  

⊟Protein

⊟General

• locus tag: NWMN_1903 [new locus tag: NWMN_RS10955 ]
• symbol: NWMN_1903
• description: hypothetical protein
• length: 131
• theoretical pI: 9.79865
• theoretical MW: 15193.7
• GRAVY: -0.150382

⊟Function

• TIGRFAM:
• TheSEED  :
  • Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B]
• PFAM:
  no clan defined DUF1523; Protein of unknown function (DUF1523) (PF07509; HMM-score: 29)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 3.33
  • Cellwall Score: 3.33
  • Extracellular Score: 3.33
  • Internal Helix: 1
• ⊞DeepLocPro: Cytoplasmic Membrane
  • Cytoplasmic Score: 0.0003
  • Cytoplasmic Membrane Score: 0.8656
  • Cell wall & surface Score: 0.0001
  • Extracellular Score: 0.1339
• ⊞LocateP: N-terminally anchored (No CS)
  • Prediction by SwissProt Classification: Membrane
  • Pathway Prediction: Sec-(SPI)
  • Intracellular possibility: 0.17
  • Signal peptide possibility: 0
  • N-terminally Anchored Score: 4
  • Predicted Cleavage Site: No CleavageSite
• ⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.107984
  • TAT(Tat/SPI): 0.002788
  • LIPO(Sec/SPII): 0.008045
• predicted transmembrane helices (TMHMM): 1

⊟Accession numbers

• GI: 151222115 NCBI
• RefSeq: YP_001332937 NCBI
• UniProt: A0A0H3KHQ7 UniProt

⊟Protein sequence

• MWEMIKKLKNMDGFDIFIVGILSLFGITALLLVVALPIYTVASYQNKEVHQGTITDKYNKRQDKEDKFYIVLDDKQVIENSDLSFKGKFDSADIQARLKVGDKVKVKTIGYRIHFLNLYPVLYEVKKVDKK

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: no polycistronic organisation predicted

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications