From AureoWiki

Revision as of 11:38, 11 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "* <aureodatabase>protein Genbank</aureodatabase> " to "")

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus COL

locus tag: SACOL_RS06680 [old locus tag: SACOL1309 ]

pan locus tag^?: SAUPAN003593000

symbol: SACOL_RS06680

pan gene symbol^?: —

synonym:
product: 2-oxoacid ferredoxin oxidoreductase subunit beta

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SACOL_RS06680 [old locus tag: SACOL1309 ]
symbol: SACOL_RS06680
product: 2-oxoacid ferredoxin oxidoreductase subunit beta
replicon: chromosome
strand: +
coordinates: 1326337..1327203
length: 867
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_002951 (1326337..1327203) NCBI
BioCyc: SACOL_RS06680 BioCyc
MicrobesOnline: see SACOL1309

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
ATGGCGACATTTAAAGATTTTAGAAATAATGTTAAGCCTAACTGGTGCCCCGGATGTGGC
GATTTCTCAGTACAAGCTGCAATTCAAAAAGCAGCCGCAAATATAGGGTTAGAACCTGAA
GAAGTAGCTATCATCACCGGTATAGGATGTTCTGGCCGTCTTTCAGGATATATTAATTCT
TATGGCGTTCATTCTATTCACGGACGTGCATTACCTTTAGCTCAAGGTGTAAAAATGGCG
AATAAAGATTTAACTGTTATTGCATCGGGAGGAGATGGTGATGGTTATGCTATAGGTATG
GGGCATACAATCCATGCTTTAAGAAGAAATATGAACATGACGTATATAGTCATGGATAAT
CAAATTTATGGTTTGACAAAGGGACAAACATCGCCGTCATCAGCAGTAGGATTTGTTACT
AAAACAACGCCAAAAGGTAATATAGAAAAAAATGTTGCGCCTTTAGAATTAGCATTATCA
TCTGGTGCCACATTTGTAGCCCAAGGTTTTTCAAGCGATATTAAAGGATTAACAAAACTA
ATTGAAGATGCAATTAATCATGATGGATTTTCATTCGTTAATGTCTTTTCACCATGTGTG
ACTTATAATAAAATTAACACATACGATTGGTTTAAAGAACATTTAACAAGTGTTGATGAC
ATTGAAAATTATGATTCTACAGATAAACAATTAGCGACTAAAACTGTTATTGAACATGAA
TCTTTAGTAACTGGTATTGTTTATCAAGATAAAGAAACACCATCATATGAATCTCAAATT
AAAGAGTTAGATGATACACCACTTGCTAAAAGAGATATCAAAATTACTGAAGACACCTTC
AATGCATTAACTGAACAATTTATTTAA
60
120
180
240
300
360
420
480
540
600
660
720
780
840
867

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SACOL_RS06680 [old locus tag: SACOL1309 ]
symbol: SACOL_RS06680
description: 2-oxoacid ferredoxin oxidoreductase subunit beta
length: 288
theoretical pI: 5.14363
theoretical MW: 31331.1
GRAVY: -0.222222

⊟Function[edit | edit source]

⊞TIGRFAM:
2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family (TIGR02177; HMM-score: 325.8)
and 7 more
indolepyruvate ferredoxin oxidoreductase, alpha subunit (TIGR03336; EC 1.2.7.8; HMM-score: 51.9)
pyruvate:ferredoxin (flavodoxin) oxidoreductase (TIGR02176; EC 1.2.7.1; HMM-score: 43)
sulfopyruvate decarboxylase, beta subunit (TIGR03846; EC 4.1.1.79; HMM-score: 25.4)
Metabolism Energy metabolism Sugars 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (TIGR04377; EC 3.7.1.-; HMM-score: 23.4)
Metabolism Amino acid biosynthesis Pyruvate family acetolactate synthase, large subunit, biosynthetic type (TIGR00118; EC 2.2.1.6; HMM-score: 18)
phosphonopyruvate decarboxylase (TIGR03297; EC 4.1.1.82; HMM-score: 17)
Metabolism Central intermediary metabolism Other sulfoacetaldehyde acetyltransferase (TIGR03457; EC 2.3.3.15; HMM-score: 15.2)
TheSEED: see SACOL1309
⊞PFAM:
THDP-binding (CL0254) TPP_enzyme_C; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain (PF02775; HMM-score: 110.4)
and 1 more
no clan defined PFO_beta_C; Pyruvate ferredoxin oxidoreductase beta subunit C terminal (PF12367; HMM-score: 80.6)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
⊞
DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.7673
- Cytoplasmic Membrane Score: 0.0341
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.1984
LocateP:
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.035242
- TAT(Tat/SPI): 0.002523
- LIPO(Sec/SPII): 0.003897
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 446112283 NCBI
RefSeq: WP_000190138 NCBI
UniProt: see SACOL1309

⊟Protein sequence[edit | edit source]

MATFKDFRNNVKPNWCPGCGDFSVQAAIQKAAANIGLEPEEVAIITGIGCSGRLSGYINSYGVHSIHGRALPLAQGVKMANKDLTVIASGGDGDGYAIGMGHTIHALRRNMNMTYIVMDNQIYGLTKGQTSPSSAVGFVTKTTPKGNIEKNVAPLELALSSGATFVAQGFSSDIKGLTKLIEDAINHDGFSFVNVFSPCVTYNKINTYDWFKEHLTSVDDIENYDSTDKQLATKTVIEHESLVTGIVYQDKETPSYESQIKELDDTPLAKRDIKITEDTFNALTEQFI

⊟Experimental data[edit | edit source]

experimentally validated: see SACOL1309
protein localization: see SACOL1309
quantitative data / protein copy number per cell: see SACOL1309
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS06680&oldid=97598"