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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2423 [new locus tag: SACOL_RS12715 ]
  • pan locus tag?: SAUPAN005962000
  • symbol: SACOL2423
  • pan gene symbol?: bioX
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2423 [new locus tag: SACOL_RS12715 ]
  • symbol: SACOL2423
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2482039..2482506
  • length: 468
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGACATCAAAAGATATTACTCAAATTAGTGTCATTGCTGCGATTTTAACCATTTTGGCA
    GTTTTGAAAATACCGTCCATTATACCAGGATTAGATTTTCAATTATCTGCACCGGCAGCA
    TTATTGATATTAGCTTTCTTTGGAATTAAAAAGTACTTTTTAGGTGGATTATTATCTAGC
    CTATTATTACTAGTATTTGGCGTATTTAATCCAATTAATGTGATTATCTCTATTATATTT
    AGAGTTATAGCTATTGCAGTTGTTTATTTATTGAAAATAAATGTACTATCATTAGTTTTA
    GCAAGTGTATTAGGCAGTTTGGTATATAGGCTACTATTATCTATTATTTTAAATTTACCT
    GTGTGGGTAGTGTTGTTAAACGCGATTCCAGGCGTAATATTCACTTTAATTGTAGCTATT
    CCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAA
    60
    120
    180
    240
    300
    360
    420
    468

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2423 [new locus tag: SACOL_RS12715 ]
  • symbol: SACOL2423
  • description: hypothetical protein
  • length: 155
  • theoretical pI: 11.1425
  • theoretical MW: 16830.9
  • GRAVY: 1.65419

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108016: hypothetical protein
  • ⊞PFAM:
    Gx_transp (CL0315) QueT; QueT transporter (PF06177; HMM-score: 40.8)
    and 2 more
    ECF_trnsprt; ECF transporter, substrate-specific component (PF12822; HMM-score: 12.5)
    no clan defined DUF1097; Protein of unknown function (DUF1097) (PF06496; HMM-score: 8.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0014
    • Cytoplasmic Membrane Score: 0.9964
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0021
  • ⊞LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008662
    • TAT(Tat/SPI): 0.000651
    • LIPO(Sec/SPII): 0.035306
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSLLLLVFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVYRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • ⊞regulator: BirA (repression) regulon

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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