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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS10350 [old locus tag: SACOL1980 ]
  • pan locus tag?: SAUPAN004952000
  • symbol: SACOL_RS10350
  • pan gene symbol?: —
  • synonym:
  • product: pectate lyase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS10350 [old locus tag: SACOL1980 ]
  • symbol: SACOL_RS10350
  • product: pectate lyase
  • replicon: chromosome
  • strand: -
  • coordinates: 2043475..2044572
  • length: 1098
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2043475..2044572) NCBI
  • BioCyc: SACOL_RS10350 BioCyc
  • MicrobesOnline: see SACOL1980

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGTATATCAATATGAAAGATTATGGGTTAACAGGCATAAACAAAACTAAAGATACTCGA
    GCAATACAACGTGCGTTAAATCGTGGAAGATGTAAACCAACGACAGTTTATATACCGAAA
    GGGACGTATGATATTTGCAAACCATTAACGATATATGGCAATACAACACTTTTGTTAGAT
    AATGAAACTATTTTACGCCGATGTCATTCTGGTCCTTTATTAAAAAATGGTCGTCGCTTT
    GGTTTTTATCGTGGTTATAATGGACACAGTCATATTCATATTAAAGGCGGCAAGTTTGAT
    ATGAATGGTGTATCGTATCCTTATAACAATACAGCTATGTGCATTGGGCATGCTGAAGAT
    ATTCAATTAATAGGTGTGACCATTAAGAATGTAGTGAGTGGTCATGCAATTGATGCTTGT
    GGGATTAACGGACTCTATATTAAAAGCTGTTCATTTGAAGGATTCATAGACTATAGTGGC
    GAACGCTTTTATTCTGAAGCAATACAATTAGACATTCAAGTACCTGGTGCTTTTCCAAAA
    TTCGGAACGACAGATGGTACGATAACGAAAAATGTCATTATCGAAGATTGTTATTTTGGA
    CCTTCAGAATTGCCCGAAATGGGAAGTTGGAATCGTGCTATTGGCTCACATGCAAGTAGA
    CATAATCGATACTATGAGAATATTCATATTAGAAATAATATATTTGAAGATATACAAGGT
    TATGCATTAACTCCCTTGAAGTATAAAGATGCTTTCATTATTAATAATAAGTTTATTAAC
    TGTGAGGGTGGCATTAGATATTTAGGAGTTAGAGATGGTAAAAATGCAGCAGATGTGATG
    ACAGGAAAAGACTTAGGTTCCCAAGCAGGCATAAATATGAATATAATTGGAAATGAATTT
    AAAGGATCAATGTCTAAAGATGCGATACATGTACGTAATTATAATAATGTTAAACATAAA
    GATGTATTAATCGTTGGGAATACATTCAATAATTCGACTCAATCAATTCATTTAGAAGAT
    ATTGATACAGTGTTTTTAAGTCCTGTTGAAGCGGGTATTCAAGTTACTACAATCAATGTA
    GATGAAATAAAAAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1098

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS10350 [old locus tag: SACOL1980 ]
  • symbol: SACOL_RS10350
  • description: pectate lyase
  • length: 365
  • theoretical pI: 8.51329
  • theoretical MW: 40719
  • GRAVY: -0.338904

⊟Function[edit | edit source]

  • TIGRFAM:
    parallel beta-helix repeat (TIGR03804; HMM-score: 4.7)
  • TheSEED: see SACOL1980
  • PFAM:
    Pec_lyase-like (CL0268) Pect-lyase_RHGA_epim; Rhamnogalacturonase A/epimerase, pectate lyase-like (PF12708; HMM-score: 44.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0482
    • Cytoplasmic Membrane Score: 0.0004
    • Cell wall & surface Score: 0.0019
    • Extracellular Score: 0.9495
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.117818
    • TAT(Tat/SPI): 0.001116
    • LIPO(Sec/SPII): 0.011057
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYINMKDYGLTGINKTKDTRAIQRALNRGRCKPTTVYIPKGTYDICKPLTIYGNTTLLLDNETILRRCHSGPLLKNGRRFGFYRGYNGHSHIHIKGGKFDMNGVSYPYNNTAMCIGHAEDIQLIGVTIKNVVSGHAIDACGINGLYIKSCSFEGFIDYSGERFYSEAIQLDIQVPGAFPKFGTTDGTITKNVIIEDCYFGPSELPEMGSWNRAIGSHASRHNRYYENIHIRNNIFEDIQGYALTPLKYKDAFIINNKFINCEGGIRYLGVRDGKNAADVMTGKDLGSQAGINMNIIGNEFKGSMSKDAIHVRNYNNVKHKDVLIVGNTFNNSTQSIHLEDIDTVFLSPVEAGIQVTTINVDEIKK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1980
  • protein localization: see SACOL1980
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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