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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004952000
- symbol?: —
- synonym:
- description?: pectate lyase
- pectate lyase
- cell wall surface anchor family protein
- parallel beta-helix repeat-containing protein
- pectate lyase superfamily protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5140248..5141333
- synteny block?: BlockID0038560
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1874
08BA02176:
C248_1994
11819-97:
MS7_1952
6850:
RSAU_001804
71193:
ST398NM01_2012
ECT-R 2:
ECTR2_1789
ED133:
SAOV_2020
ED98:
SAAV_1984
HO 5096 0412:
SAEMRSA15_18270
JH1:
SaurJH1_2007
JH9:
SaurJH9_1973
JKD6008:
SAA6008_01938
JKD6159:
SAA6159_01849
LGA251:
SARLGA251_18020
M013:
M013TW_1954
MRSA252:
SAR2010
MSHR1132:
SAMSHR1132_17620
MSSA476:
SAS1841
Mu3:
SAHV_1902
Mu50:
SAV1917
MW2:
MW1858
RF122:
SAB1854c
ST398:
SAPIG2012
T0131:
SAT0131_02046
TCH60:
HMPREF0772_11224
TW20:
SATW20_19120
USA300_TCH1516:
USA300HOU_1919
VC40:
SAVC_08850
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MYINMKDYGLTGINKTKDTRAIQRALNRGRCKPTTVYIPKGTYDICKPLTIYGNTTLLLD
N315 MYINMKDYGLTGINKTKDTRAIQRALNRGRCKPTTVYIPKGTYDICKPLTIYGNTTLLLD
NCTC8325 MYINMKDYGLTGINKTKDTRAIQRALNRGRCKPTTVYIPKGTYDICKPLTIYGNTTLLLD
Newman MYINMKDYGLTGINKTKDTRAIQRALNRGRCKPTTVYIPKGTYDICKPLTIYGNTTLLLD
USA300_FPR3757 MYINMKDYGLTGINKTKDTRAIQRALNRGRCKPTTVYIPKGTYDICKPLTIYGNTTLLLD
************************************************************
COL NETILRRCHSGPLLKNGRRFGFYRGYNGHSHIHIKGGKFDMNGVSYPYNNTAMCIGHAED
N315 NETILRRCHSGPLLKNGHRFGFYRGYNGHSHIHIKGGKFDMNGVSYPYNNTAMCIGHAED
NCTC8325 NETILRRCHSGPLLKNGRRFGFYRGYNGHSHIHIKGGKFDMNGVSYPYNNTAMCIGHAED
Newman NETILRRCHSGPLLKNGRRFGFYRGYNGHSHIHIKGGKFDMNGVSYPYNNTAMCIGHAED
USA300_FPR3757 NETILRRCHSGPLLKNGRRFGFYRGYNGHSHIHIKGGKFDMNGVSYPYNNTAMCIGHAED
*****************:******************************************
COL IQLIGVTIKNVVSGHAIDACGINGLYIKSCSFEGFIDYSGERFYSEAIQLDIQVPGAFPK
N315 IQLIGVTIKNVVSGHAIDACGINGLYIKSCSFEGFIDYSGERFYSEAIQLDIQVPGAFPK
NCTC8325 IQLIGVTIKNVVSGHAIDACGINGLYIKSCSFEGFIDYSGERFYSEAIQLDIQVPGAFPK
Newman IQLIGVTIKNVVSGHAIDACGINGLYIKSCSFEGFIDYSGERFYSEAIQLDIQVPGAFPK
USA300_FPR3757 IQLIGVTIKNVVSGHAIDACGINGLYIKSCSFEGFIDYSGERFYSEAIQLDIQVPGAFPK
************************************************************
COL FGTTDGTITKNVIIEDCYFGPSELPEMGSWNRAIGSHASRHNRYYENIHIRNNIFEDIQG
N315 FGTTDGTITKNVVIEDCYFGPSELPEMGSWNRAIGSHASRHNRYYENIHIRNNIFEDIQG
NCTC8325 FGTTDGTITKNVIIEDCYFGPSELPEMGSWNRAIGSHASRHNRYYENIHIRNNIFEDIQG
Newman FGTTDGTITKNVIIEDCYFGPSELPEMGSWNRAIGSHASRHNRYYENIHIRNNIFEDIQG
USA300_FPR3757 FGTTDGTITKNVIIEDCYFGPSELPEMGSWNRAIGSHASRHNRYYENIHIRNNIFEDIQG
************:***********************************************
COL YALTPLKYKDAFIINNKFINCEGGIRYLGVRDGKNAADVMTGKDLGSQAGINMNIIGNEF
N315 YALTPLKYKDAFIINNKFINCEGGIRYLGVRDGKNAADVMTGKDLGSQAGINMNIIGNEF
NCTC8325 YALTPLKYKDAFIINNKFINCEGGIRYLGVRDGKNAADVMTGKDLGSQAGINMNIIGNEF
Newman YALTPLKYKDAFIINNKFINCEGGIRYLGVRDGKNAADVMTGKDLGSQAGINMNIIGNEF
USA300_FPR3757 YALTPLKYKDAFIINNKFINCEGGIRYLGVRDGKNAADVMTGKDLGSQAGINMNIIGNEF
************************************************************
COL KGSMSKDAIHVRNYNNVKHKDVLIVGNTFNNSTQSIHLEDIDTVFLSPVEAGIQVTTINV
N315 KGSMSKDAIHVRNYNNVKHKDVLIVGNTFNNSTQSIHLEDIDTVFLSPVEAGIQVTTINI
NCTC8325 KGSMSKDAIHVRNYNNVKHKDVLIVGNTFNNSTQSIHLEDIDTVFLSPVEAGIQVTTINV
Newman KGSMSKDAIHVRNYNNVKHKDVLIVGNTFNNSTQSIHLEDIDTVFLSPVEAGIQVTTINV
USA300_FPR3757 KGSMSKDAIHVRNYNNVKHKDVLIVGNTFNNSTQSIHLEDIDTVFLSPVEAGIQVTTINV
***********************************************************:
COL DEIKK
N315 DEIKK
NCTC8325 DEIKK
Newman DEIKK
USA300_FPR3757 DEIKK
*****