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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus COL

locus tag: SACOL_RS11690 [old locus tag: SACOL2221 ]

pan locus tag^?: SAUPAN005684000

symbol: SACOL_RS11690

pan gene symbol^?: rpmD

synonym:
product: 50S ribosomal protein L30

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SACOL_RS11690 [old locus tag: SACOL2221 ]
symbol: SACOL_RS11690
product: 50S ribosomal protein L30
replicon: chromosome
strand: -
coordinates: 2298745..2298924
length: 180
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_002951 (2298745..2298924) NCBI
BioCyc: SACOL_RS11690 BioCyc
MicrobesOnline: see SACOL2221

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
ATGGCTAAATTACAAATTACCCTCACTCGTAGTGTTATTGGTCGTCCTGAAACACAACGT
AAAACTGTTGAAGCTTTAGGTCTTAAAAAGACTAACAGTTCAGTAGTTGTTGAAGATAAC
CCTGCTATTCGTGGGCAAATCAACAAAGTTAAGCACTTAGTAACAGTAGAAGAAAAATAA
60
120
180

⊟Protein[edit | edit source]

Protein Data Bank: 4WCE

⊟General[edit | edit source]

locus tag: SACOL_RS11690 [old locus tag: SACOL2221 ]
symbol: SACOL_RS11690
description: 50S ribosomal protein L30
length: 59
theoretical pI: 10.9014
theoretical MW: 6553.63
GRAVY: -0.4

⊟Function[edit | edit source]

⊞TIGRFAM:
Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL30 (TIGR01308; HMM-score: 96)
and 1 more
Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL30 (TIGR01309; HMM-score: 22.1)
TheSEED: see SACOL2221
PFAM:
no clan defined Ribosomal_L30; Ribosomal protein L30p/L7e (PF00327; HMM-score: 83.7)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.67
- Cytoplasmic Membrane Score: 0.01
- Cellwall Score: 0.15
- Extracellular Score: 0.17
- Internal Helices: 0
⊞
DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.8898
- Cytoplasmic Membrane Score: 0.0005
- Cell wall & surface Score: 0.0032
- Extracellular Score: 0.1065
LocateP:
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008552
- TAT(Tat/SPI): 0.00171
- LIPO(Sec/SPII): 0.001474
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 447019321 NCBI
RefSeq: WP_001096577 NCBI
UniProt: see SACOL2221

⊟Protein sequence[edit | edit source]

MAKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVEEK

⊟Experimental data[edit | edit source]

experimentally validated: see SACOL2221
protein localization: see SACOL2221
quantitative data / protein copy number per cell: see SACOL2221
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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