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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS10130 [old locus tag: NWMN_1772 ]
  • pan locus tag?: SAUPAN001708000
  • symbol: NWMN_RS10130
  • pan gene symbol?: —
  • synonym:
  • product: tail protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS10130 [old locus tag: NWMN_1772 ]
  • symbol: NWMN_RS10130
  • product: tail protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1983099..1984271
  • length: 1173
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1983099..1984271) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1772

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGTACAAAATAAAAGATGTTGAAACGAGAATAAAAAATGATGGTGTTGACTTAGGTGAC
    ATTGGCTGTCGATTTTACACTGAAGATGAAAATACAGCATCTATAAGAATAGGTATCAAT
    GACAAACAAGGTCGTATCGATCTAAAAGCACATGGCTTAACACCTAGATTACATTTGTTT
    ATGGAAGATGGCTCTATATTCAAAAATGAGCCCCTTATTATCGACGATGTTGTAAAAGGG
    TTCCTTACCTACAAGATACCTAAAAAGGTTATCAAACACGCTGGTTATGTTCGTTGTAAG
    CTGTTTTTAGAGAAAGAAGAAGAAAAAATACATGTCGCGAACTTTTCTTTCAATATCGTT
    GATAGTGGCATTGAATCTGCTGTAGCAAAAGAAATCGATGTTAAATTGGTAGATGATGCT
    ATTACGAGAATCTTAAAAGATAACGCGACAGATTTATTGAGCAAAGACTTTAAAGAGAAA
    ATAGATAAAGATGTCATTTCTTACATCGAAAAGAATGAAAGTAGATTTAAAGGTGCGAAA
    GGTGATAAAGGCGAACCGGGACAACCTGGTGCAAAAGGTGAAGCAGGTAAAAAAGGAGAA
    CAAGGCGCACCCGGTAAAAACGGTACTGTAGTATCAATCAATCCTGACACTAAAATGTGG
    CAAATTGATGGTAAAGATACAGATATCAAAGCAGAACCTGAGTTATTGGACAAAATCAAT
    ATCGCAAATGTTGAAGGGTTAGAAGATAAATTGCAAGAAGTTGAAAAAATCAAAGATACA
    ACTCTCAACGACTCTAAAACGTATACGGATACAAAAATTGCTGAACTAGTTGATAGCGCG
    CCTGAATCTATGAACACATTAAGAGAATTAGCAGAAGCAATACAAAACAACTCTATTTCA
    GAAAGTGTATTGCAACAGATTGGCTCAAAAGTTAGTACAGAAGATTTTGAGGAATTCAAA
    CAAACACTAAATGATTTATATGCTCCAAAAAATCATAATCATGACGAGCGGTATGTTTTG
    TCATCTCAAGCTTTTACTAAACAACAAGCGGATAGTTTATATCAACTAAAAAGCGCATCT
    CAACCGACGGTTAAAATTTGGACAGGAACAGAAAATGAATATAACTATATATATCAAAAA
    GACCCTAATACACTTTACTTAATTAAGGGGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1173

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS10130 [old locus tag: NWMN_1772 ]
  • symbol: NWMN_RS10130
  • description: tail protein
  • length: 390
  • theoretical pI: 4.94666
  • theoretical MW: 43804
  • GRAVY: -0.665128

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see NWMN_1772
  • ⊞PFAM:
    E-set (CL0159) BppU_N; BppU N-terminal domain (PF10651; HMM-score: 123.7)
    and 5 more
    no clan defined Collagen; Collagen triple helix repeat (20 copies) (PF01391; HMM-score: 25.6)
    Phage_tail_C; Phage tail tip domain (PF24243; HMM-score: 22.1)
    PIG-S; Phosphatidylinositol-glycan biosynthesis class S protein (PF10510; HMM-score: 14.2)
    PBP_NTD (CL0776) PBP_dimer; Penicillin-binding Protein dimerisation domain (PF03717; HMM-score: 11.5)
    RNase_H (CL0219) RNase_HII; Ribonuclease HII (PF01351; HMM-score: 9.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cell wall & surface
    • Cytoplasmic Score: 0.1457
    • Cytoplasmic Membrane Score: 0.0022
    • Cell wall & surface Score: 0.6812
    • Extracellular Score: 0.1709
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006029
    • TAT(Tat/SPI): 0.000458
    • LIPO(Sec/SPII): 0.001929
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYKIKDVETRIKNDGVDLGDIGCRFYTEDENTASIRIGINDKQGRIDLKAHGLTPRLHLFMEDGSIFKNEPLIIDDVVKGFLTYKIPKKVIKHAGYVRCKLFLEKEEEKIHVANFSFNIVDSGIESAVAKEIDVKLVDDAITRILKDNATDLLSKDFKEKIDKDVISYIEKNESRFKGAKGDKGEPGQPGAKGEAGKKGEQGAPGKNGTVVSINPDTKMWQIDGKDTDIKAEPELLDKINIANVEGLEDKLQEVEKIKDTTLNDSKTYTDTKIAELVDSAPESMNTLRELAEAIQNNSISESVLQQIGSKVSTEDFEEFKQTLNDLYAPKNHNHDERYVLSSQAFTKQQADSLYQLKSASQPTVKIWTGTENEYNYIYQKDPNTLYLIKG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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