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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS08310 [old locus tag: NWMN_1475 ]
  • pan locus tag?: SAUPAN004155000
  • symbol: NWMN_RS08310
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS08310 [old locus tag: NWMN_1475 ]
  • symbol: NWMN_RS08310
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1641970..1642668
  • length: 699
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1641970..1642668) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1475

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGAGTGTCGGTATTCTAATTTTTGTCATATCAGTGATCATTTCTATCATTACTACTATG
    CGCGAAAATAGTCATAAAGATAGACAAAATCAAAAGCCACCTCAAAAAACATCTACCGAT
    AATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGT
    GAAGAATTAAATGAAGAAGAAAAGAAATCATCGAAACGAAAATATGATGATACGTTACCA
    CCTTTATTCGATGAACTTCCAAAGGAAGAGCCTAAATCGAAACCTGTTGTAGAACCTATG
    GCACCTAAAAAACAACAAGAAACAAAACCGATGACAGAGAAACCAATCACAGTGCCTAAA
    GCAGAACCGGTGGAGCAGAAACATAGACCTTCTAGACAAGATAATTCTGACGAAATTAGA
    CGTCAATTAGAAAAATCACTTAGAGATGATATTAAAACGATTCGTACTGACATTGATAGA
    GAAAAAGAAAAGCAAATTGCTAAAATGGAAAAACGTGCTAGAGATATTATTGAGGATAAA
    TACTTATCTGAACGTACAAAACGTTTGAAATTAAAGCAGCTGCTTAATTCTCAAAATGTC
    GAAAAAGATTTGACTAAATCAGCGTTCCAATTTGATAAAGATGAAGTAATCAATGGTATG
    ATATGGTCAGAAATTTTAGCTAAACCAAAACAATTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    699

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS08310 [old locus tag: NWMN_1475 ]
  • symbol: NWMN_RS08310
  • description: hypothetical protein
  • length: 232
  • theoretical pI: 9.69683
  • theoretical MW: 27256
  • GRAVY: -1.13578

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Cellular processes Cellular processes Pathogenesis putative immunoglobulin-blocking virulence protein (TIGR04526; HMM-score: 17.2)
    and 2 more
    Metabolism Energy metabolism TCA cycle succinate dehydrogenase, flavoprotein subunit (TIGR01816; HMM-score: 11)
    RNA polymerase sigma factor, sigma-70 family (TIGR02937; HMM-score: 4.6)
  • TheSEED: see NWMN_1475
  • ⊞PFAM:
    no clan defined DUF2897; Protein of unknown function (DUF2897) (PF11446; HMM-score: 14.2)
    KNTase_C (CL0291) HEPN_STY4199; STY4199-like HEPN (PF18729; HMM-score: 14.2)
    no clan defined ComGE; Competence system putative prepilin ComGE (PF11773; HMM-score: 13)
    and 4 more
    DUF6479; Family of unknown function (DUF6479) (PF20087; HMM-score: 11.3)
    DUF5854; Family of unknown function (DUF5854) (PF19172; HMM-score: 10.4)
    DUF3899; Domain of unknown function (DUF3899) (PF13038; HMM-score: 9)
    DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helix: 1
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0143
    • Cytoplasmic Membrane Score: 0.9811
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.0041
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.351133
    • TAT(Tat/SPI): 0.001289
    • LIPO(Sec/SPII): 0.216154
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSVGILIFVISVIISIITTMRENSHKDRQNQKPPQKTSTDNEPKKGGFFEEIERTFKEISEELNEEEKKSSKRKYDDTLPPLFDELPKEEPKSKPVVEPMAPKKQQETKPMTEKPITVPKAEPVEQKHRPSRQDNSDEIRRQLEKSLRDDIKTIRTDIDREKEKQIAKMEKRARDIIEDKYLSERTKRLKLKQLLNSQNVEKDLTKSAFQFDKDEVINGMIWSEILAKPKQL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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