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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS06290 [old locus tag: SACOL1228 ]
  • pan locus tag?: SAUPAN003499000
  • symbol: SACOL_RS06290
  • pan gene symbol?: fmt
  • synonym:
  • product: methionyl-tRNA formyltransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS06290 [old locus tag: SACOL1228 ]
  • symbol: SACOL_RS06290
  • product: methionyl-tRNA formyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 1237886..1238821
  • length: 936
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1237886..1238821) NCBI
  • BioCyc: SACOL_RS06290 BioCyc
  • MicrobesOnline: see SACOL1228

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACTAAAATAATATTTATGGGTACACCAGACTTTTCAACAACTGTTTTAGAAATGCTT
    ATTGCAGAACATGATGTCATTGCAGTCGTAACGCAACCAGATCGACCTGTTGGACGTAAA
    CGTGTTATGACACCACCACCAGTTAAAAAAGTTGCAATGAAATATGATTTACCTGTATAT
    CAACCTGAAAAATTAAGTGGATCAGAAGAATTAGAACAATTGCTTCAATTAGATGTAGAT
    TTAATTGTAACTGCTGCTTTTGGACAATTATTACCTGAATCATTGTTGGCATTACCAAAT
    CTTGGGGCAATTAATGTACATGCATCATTGTTACCGAAGTATAGAGGTGGTGCACCAATT
    CATCAGGCAATTATCGATGGTGAACAAGAAACCGGCATAACAATTATGTATATGGTTAAA
    AAATTAGATGCGGGTAATATTATTTCGCAACAAGCAATTAAAATAGAAGAAAATGATAAT
    GTCGGTACGATGCATGATAAATTAAGTGTATTAGGGGCAGATTTATTAAAAGAAACTTTA
    CCATCTATTATAGAGGGCACAAATGAAAGCGTACCTCAAGATGATACGCAAGCAACATTT
    GCTTCCAATATTCGACGCGAAGATGAGCGAATTAGCTGGAATAAACCAGGAAGACAAGTG
    TTTAATCAAATTCGTGGATTATCACCATGGCCAGTTGCTTATACAACTATGGATGACACT
    AACTTGAAAATATACGATGCTGAACTCGTTGAGACTAATAAGATAAACGAGCCTGGAACC
    ATTATAGAAACGACTAAAAAAGCCATTATTGTTGCTACAAATGATAATGAAGCTGTTGCA
    ATTAAAGATATGCAATTAGCTGGGAAAAAGAGAATGTTAGCTGCCAATTATTTAAGTGGT
    GCGCAAAACACACTAGTAGGGAAGAAACTTATATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    936

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS06290 [old locus tag: SACOL1228 ]
  • symbol: SACOL_RS06290
  • description: methionyl-tRNA formyltransferase
  • length: 311
  • theoretical pI: 4.95985
  • theoretical MW: 34211.3
  • GRAVY: -0.160129

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 2.1.2.9?  ExPASy
    Methionyl-tRNA formyltransferase 10-formyltetrahydrofolate + L-methionyl-tRNA(fMet) = tetrahydrofolate + N-formylmethionyl-tRNA(fMet)
  • ⊞TIGRFAM:
    Genetic information processing Protein synthesis tRNA aminoacylation methionyl-tRNA formyltransferase (TIGR00460; EC 2.1.2.9; HMM-score: 355.3)
    and 2 more
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylglycinamide formyltransferase (TIGR00639; EC 2.1.2.2; HMM-score: 68.3)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis formyltetrahydrofolate deformylase (TIGR00655; EC 3.5.1.10; HMM-score: 57.6)
  • TheSEED: see SACOL1228
  • ⊞PFAM:
    no clan defined Formyl_trans_N; Formyl transferase (PF00551; HMM-score: 141)
    and 2 more
    Formyl_trans_C; Formyl transferase, C-terminal domain (PF02911; HMM-score: 97.3)
    DUF7425; Domain of unknown function (DUF7425) (PF24200; HMM-score: 15.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9993
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0006
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011881
    • TAT(Tat/SPI): 0.000818
    • LIPO(Sec/SPII): 0.001435
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTKIIFMGTPDFSTTVLEMLIAEHDVIAVVTQPDRPVGRKRVMTPPPVKKVAMKYDLPVYQPEKLSGSEELEQLLQLDVDLIVTAAFGQLLPESLLALPNLGAINVHASLLPKYRGGAPIHQAIIDGEQETGITIMYMVKKLDAGNIISQQAIKIEENDNVGTMHDKLSVLGADLLKETLPSIIEGTNESVPQDDTQATFASNIRREDERISWNKPGRQVFNQIRGLSPWPVAYTTMDDTNLKIYDAELVETNKINEPGTIIETTKKAIIVATNDNEAVAIKDMQLAGKKRMLAANYLSGAQNTLVGKKLI

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1228
  • protein localization: see SACOL1228
  • quantitative data / protein copy number per cell: see SACOL1228
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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